PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01111-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 309aa    MW: 33312.2 Da    PI: 6.2326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01111-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.1e-172473255
                                                   AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                                                          ++ GVr+++ +grWv+eI+d      ++ r +lg+f+tae+Aa+a++ a++ l+g
  augustus_masked-scaffold01111-abinit-gene-0.3-mRNA-1 24 RFVGVRQRP-SGRWVSEIKD----SlRKVRLWLGTFDTAEDAARAYDDAARGLRG 73
                                                          689******.7*********....4345***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.6E-342487IPR001471AP2/ERF domain
PROSITE profilePS5103220.1522481IPR001471AP2/ERF domain
PfamPF008477.9E-112473IPR001471AP2/ERF domain
CDDcd000182.25E-162481No hitNo description
Gene3DG3DSA:3.30.730.102.9E-282481IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-192582IPR016177DNA-binding domain
PRINTSPR003679.2E-82536IPR001471AP2/ERF domain
PRINTSPR003679.2E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGLRASPDGT LRGRRKSSSR GHHRFVGVRQ RPSGRWVSEI KDSLRKVRLW LGTFDTAEDA  60
ARAYDDAARG LRGANARTNF ELPQLGSNGV GADTIEPFSF EQVCVTGTES DGLLGALKVK  120
LQDGKVPPVV APANFLGAQS CVEANSPHNN TSSKRDHVLL ATAVVPHGIG NLDPMQAGSN  180
MADSLLYDEG VAGHVGVQWH QTASPTSMAW SNIEPAYEVP LPTQMNPVNN EHGLITSATT  240
TNVTSAWTDS TVNLACADQG AMELPITNKI TEGVWLIDQQ QVLHYENNNW GGAIPSWDQA  300
LFYASCILR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1322801271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972748.13e-90PREDICTED: uncharacterized protein LOC18605918
TrEMBLA0A061G1T04e-88A0A061G1T0_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGEOY237957e-89(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-14related to AP2 11