PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00976-abinit-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family G2-like
Protein Properties Length: 342aa    MW: 37812.1 Da    PI: 6.3604
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00976-abinit-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.71.3e-33275329155
                                                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                                            kpr+rWtpeLHerFveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl
  augustus_masked-scaffold00976-abinit-gene-0.13-mRNA-1 275 KPRMRWTPELHERFVEAVNKLDGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 329
                                                            79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.02E-18272329IPR009057Homeodomain-like
PROSITE profilePS5129410.214272332IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-32274330IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-25275330IPR006447Myb domain, plants
PfamPF002498.4E-10277328IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MRVRLPSKTM NHDRIISSEQ SEATRGVKQP YYATLSSVHN FFTIESEGNS LSASECSSSH  60
PFPFIHNESF SSLTHTRAST VHPQKHCLKS GSNSPLSPAS CVQNSKSTFS RASVFCTSLY  120
QSSSSSSETH RRLGNLPFLP HPPSYNQSIS AVDSKAPLLF SGDIDNQYDE EHSDALMKDF  180
LNFPGDASEE LHGVSCASDS LALTEQLELQ FLSDELDMAI TDHGENPRLD EIYDTPQAPS  240
KPAIELTCNQ SSHSVVEALD DLSSQPSPGS ATLHKPRMRW TPELHERFVE AVNKLDGAEK  300
ATPKGVLKLM NVEGLTIYHV KSHLQKYRLA KYMPEKKEGK GM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-28275332259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-28275332259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-28275332259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-28275332259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-28275332259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-28275332259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-28275332259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-28275332259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018839288.11e-169PREDICTED: myb family transcription factor PHL6
RefseqXP_018839289.11e-169PREDICTED: myb family transcription factor PHL6
RefseqXP_018839290.11e-169PREDICTED: myb family transcription factor PHL6
RefseqXP_018839291.11e-169PREDICTED: myb family transcription factor PHL6
SwissprotQ949U22e-91PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A2N9F8V50.0A0A2N9F8V5_FAGSY; Uncharacterized protein
STRINGXP_002513291.11e-143(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134691925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.22e-90G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]