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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold00774-abinit-gene-0.4-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | WRKY | ||||||||
Protein Properties | Length: 135aa MW: 14986.9 Da PI: 9.9815 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 35.2 | 2.5e-11 | 105 | 126 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK vk+s +pr augustus_masked-scaffold00774-abinit-gene-0.4-mRNA-1 105 LDDGYRWRKYGQKAVKNSVYPR 126 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.7E-12 | 91 | 126 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-9 | 98 | 127 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.576 | 100 | 126 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0017 | 105 | 135 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-7 | 106 | 127 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MEGQNSPTPS SLPPNNMTPP FLFTPSLDPE IDWISLLSTA QPAGFPSAEN NIKPIMELSG 60 STNGVVLDHE KGNNNNKDKR KSGGRIKKAT RPRFAFQTRS ADDILDDGYR WRKYGQKAVK 120 NSVYPRCAGY SFIIL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023877759.1 | 1e-78 | probable WRKY transcription factor 43 | ||||
TrEMBL | B9RDY7 | 1e-34 | B9RDY7_RICCO; WRKY transcription factor, putative | ||||
STRING | XP_002511926.1 | 2e-35 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3227 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46130.2 | 6e-19 | WRKY DNA-binding protein 43 |