PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00763-abinit-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 358aa    MW: 40079.2 Da    PI: 5.1798
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00763-abinit-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19142192155
                                                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                            ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  augustus_masked-scaffold00763-abinit-gene-0.13-mRNA-1 142 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 192
                                                            59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.71E-32142199No hitNo description
PROSITE profilePS5103223.578143200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-30143200IPR001471AP2/ERF domain
SMARTSM003804.9E-38143206IPR001471AP2/ERF domain
PfamPF008472.3E-12143192IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-21143200IPR016177DNA-binding domain
PRINTSPR003674.0E-10144155IPR001471AP2/ERF domain
PRINTSPR003674.0E-10166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSESLATMNH HYQNHSAQVK YTEHRVNIAK LLKPVQISET SSSTELMKQQ QQRRVVRISV  60
TDGNATDSSS DDEDHGRQRV KRFVSEITIE SSCSTPPQAE NDSVWRKRSC SSRTKSARKK  120
CASKVRGATK VPPTTTATTT EKKFRGVRQR PWGKWAAEIR DPLRRVRLWL GTYDTAEEAA  180
MVYDNAAIQL RGPDALTNFT SPPLKSSPES HKPVVGTSFG YNSGDESHNN SNKNSPTTVL  240
LQCPSPSNEE ADSLMKETRD IGDLREESCV SENFSEYSCF DSLIPDDIFD FRSSVPDLLF  300
DEASVNENVF AGEDFGFGES DMFMSSCENF GFGYSRWHAD DYFQDIGDIF GSDPLVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20142205162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023879234.10.0ethylene-responsive transcription factor CRF2-like
TrEMBLA0A2N9FH781e-153A0A2N9FH78_FAGSY; Uncharacterized protein
STRINGXP_008239077.11e-114(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-59cytokinin response factor 2