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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold00752-abinit-gene-0.4-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 319aa MW: 34654.1 Da PI: 4.2826 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.5e-17 | 61 | 111 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r kr +lg+f a +Aa a+++a++ ++g augustus_masked-scaffold00752-abinit-gene-0.4-mRNA-1 61 CNYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGTFENAVDAATAYDEAARVMYG 111 56*****999.**********8...3.35**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.72E-31 | 61 | 121 | No hit | No description |
Pfam | PF00847 | 1.7E-10 | 61 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.259 | 62 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-33 | 62 | 125 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 62 | 121 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-31 | 62 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-9 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-9 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MESSKKRKIR GDGVSVAERL AEWRDYNAQV ESSAKRARKI PAMGSKKGCM KGKGGPENLH 60 CNYRGVRQRT WGKWVAEIRE PNRGKRLWLG TFENAVDAAT AYDEAARVMY GAYARLNFPE 120 SVSTISGHTP GESEVSADES TAMPSTSEST AMPTTSCLVE DESGIASYSK DSGLDHFLGC 180 SENEYIDVQE LMALLDNDPL GFTDSELGFG YDGDQLGLPA MPSTSNLVEM QTNESTAMPT 240 TSSLVEDESA SYSENEHYNV QELMALLDND PLGFMVSELS FGYNGDQPGL SVTKAAVPST 300 SNLAETETNE PTGVDSRQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-18 | 62 | 122 | 2 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023900832.1 | 1e-123 | dehydration-responsive element-binding protein 2A-like | ||||
Swissprot | Q8LFR2 | 1e-46 | DRE2C_ARATH; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A0A2N9GRQ3 | 3e-69 | A0A2N9GRQ3_FAGSY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1175 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 2e-39 | DRE-binding protein 2A |
Publications ? help Back to Top | |||
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