PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold00552-abinit-gene-0.6-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 266aa MW: 29772 Da PI: 9.4962 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2.1e-18 | 107 | 157 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg++ tae Aa a+++a+ kl+ge augustus_masked-scaffold00552-abinit-gene-0.6-mRNA-1 107 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 157 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.98E-16 | 106 | 166 | No hit | No description |
SMART | SM00380 | 3.6E-36 | 107 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-22 | 107 | 164 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-31 | 107 | 165 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.235 | 107 | 164 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.5E-13 | 108 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-10 | 108 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-10 | 130 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDTNQDQNIP FTNTGGADIR SSLSQLILTG GTSTLDSIFS HCSPSNAITN PVFEPLGSSV 60 YLHQRDLLQK LWQENRPSSL LNHTFLKTPL QSSVCTSSYK SPCKKKLYRG VRQRHWGKWV 120 AEIRLPQNRM RVWLGTYETA EAAAYAYDRA AYKLRGEYAR LNFPNLKDPS KLGFGDCARL 180 NALKSSVDAK IQAICQKVKR EKAKKNAKKS IECPIAMALA EESGLEGCSL EKMPSFDPEL 240 IWEVLADQRR FVSVYGGFGG DDVRSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-21 | 104 | 164 | 2 | 63 | ATERF1 |
3gcc_A | 5e-21 | 104 | 164 | 2 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023889897.1 | 1e-131 | ethylene-responsive transcription factor ERF061-like | ||||
Swissprot | Q9C7W2 | 6e-60 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A2N9GBL7 | 1e-113 | A0A2N9GBL7_FAGSY; Uncharacterized protein | ||||
STRING | EMJ10581 | 1e-100 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7181 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 8e-55 | ERF family protein |
Publications ? help Back to Top | |||
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