PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00534-abinit-gene-0.10-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 267aa MW: 30626.5 Da PI: 5.3832

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00534-abinit-gene-0.10-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.2	2e-50	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek 56 lppGfrF P+deelv++yL kk++++++ ++ e+d++++ePw+Lp+ +k + + augustus_masked-scaffold00534-abinit-gene-0.10-mRNA-1 10 LPPGFRFYPSDEELVCHYLYKKITNEEVLK-GTLMEIDLHTCEPWQLPEVAKLNAT 64 79**********************9655.78***********88888999 PP NAM 57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykg 111 ewyfFs rd+kyatg r+nrat+sgyWkatgkd++vl+ ++e vg++ktLvfy++ augustus_masked-scaffold00534-abinit-gene-0.10-mRNA-1 65 EWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPmSREIVGMRKTLVFYRN 120 **********************************978888******** PP NAM 112 rapkgektdWvmheyrle 129 rap+g kt W+mhe+rle augustus_masked-scaffold00534-abinit-gene-0.10-mRNA-1 121 RAPNGIKTGWIMHEFRLE 138 *************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-60	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.748	10	156	IPR003441	NAC domain
Pfam	PF02365	1.3E-27	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KITNEEVLKG TLMEIDLHTC EPWQLPEVAK 60 LNATEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV LDPMSREIVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKSKGL APNLEDSNQL MFETTSCGPT 180 SQTMPCGYNQ ITSFASTPSH HNQSNSLLNL LQFSQGTDTN NEITSKGDDE YGFLWDMNLE 240 EDSLGNGAPS NLEEMSRFEI DNGMVFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-46	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-46	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-46	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-46	9	156	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-46	9	156	19	168	NAC domain-containing protein 19
3swm_B	1e-46	9	156	19	168	NAC domain-containing protein 19
3swm_C	1e-46	9	156	19	168	NAC domain-containing protein 19
3swm_D	1e-46	9	156	19	168	NAC domain-containing protein 19
3swp_A	1e-46	9	156	19	168	NAC domain-containing protein 19
3swp_B	1e-46	9	156	19	168	NAC domain-containing protein 19
3swp_C	1e-46	9	156	19	168	NAC domain-containing protein 19
3swp_D	1e-46	9	156	19	168	NAC domain-containing protein 19
4dul_A	1e-46	9	156	16	165	NAC domain-containing protein 19
4dul_B	1e-46	9	156	16	165	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023907574.1	0.0	NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	9e-63	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A2N9EQA2	1e-178	A0A2N9EQA2_FAGSY; Uncharacterized protein
STRING	EOX94424	1e-155	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4381	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	8e-93	NAC domain containing protein 74

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]