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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold00534-abinit-gene-0.10-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 267aa MW: 30626.5 Da PI: 5.3832 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.2 | 2e-50 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek 56 lppGfrF P+deelv++yL kk++++++ ++ e+d++++ePw+Lp+ +k + + augustus_masked-scaffold00534-abinit-gene-0.10-mRNA-1 10 LPPGFRFYPSDEELVCHYLYKKITNEEVLK-GTLMEIDLHTCEPWQLPEVAKLNAT 64 79************************9655.78***************88888999 PP NAM 57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykg 111 ewyfFs rd+kyatg r+nrat+sgyWkatgkd++vl+ ++e vg++ktLvfy++ augustus_masked-scaffold00534-abinit-gene-0.10-mRNA-1 65 EWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPmSREIVGMRKTLVFYRN 120 **************************************978888************ PP NAM 112 rapkgektdWvmheyrle 129 rap+g kt W+mhe+rle augustus_masked-scaffold00534-abinit-gene-0.10-mRNA-1 121 RAPNGIKTGWIMHEFRLE 138 ***************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-60 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.748 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KITNEEVLKG TLMEIDLHTC EPWQLPEVAK 60 LNATEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV LDPMSREIVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKSKGL APNLEDSNQL MFETTSCGPT 180 SQTMPCGYNQ ITSFASTPSH HNQSNSLLNL LQFSQGTDTN NEITSKGDDE YGFLWDMNLE 240 EDSLGNGAPS NLEEMSRFEI DNGMVFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-46 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-46 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-46 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-46 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-46 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-46 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-46 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-46 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-46 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-46 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-46 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-46 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-46 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-46 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023907574.1 | 0.0 | NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 9e-63 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2N9EQA2 | 1e-178 | A0A2N9EQA2_FAGSY; Uncharacterized protein | ||||
STRING | EOX94424 | 1e-155 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4381 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 8e-93 | NAC domain containing protein 74 |