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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold00498-abinit-gene-0.4-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 168aa MW: 19468.4 Da PI: 9.8097 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.5 | 1.5e-50 | 20 | 146 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew 58 pGfrFhPtdeelv +yL++kv++k++ l + ik++diyk++PwdLp + + +ekew augustus_masked-scaffold00498-abinit-gene-0.4-mRNA-1 20 LPGFRFHPTDEELVGFYLQRKVDKKPICL-DLIKHIDIYKHDPWDLP-TGSVGEKEW 74 69************************999.99***************.4456899** PP NAM 59 yfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgra 113 yfF++r kky+++ r+nr+t sg+Wkatg dk+++s +e +glkk+Lv+y+g+a augustus_masked-scaffold00498-abinit-gene-0.4-mRNA-1 75 YFFCRRGKKYKNSVRPNRVTGSGFWKATGIDKAIYSVkePHECIGLKKSLVYYRGSA 131 ***********************************97545566************** PP NAM 114 pkgektdWvmheyrl 128 kg+ktdW+mhe+rl augustus_masked-scaffold00498-abinit-gene-0.4-mRNA-1 132 GKGTKTDWMMHEFRL 146 *************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-52 | 14 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.674 | 19 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-26 | 21 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MEVKKMSVLV NGCKDDEDFL PGFRFHPTDE ELVGFYLQRK VDKKPICLDL IKHIDIYKHD 60 PWDLPTGSVG EKEWYFFCRR GKKYKNSVRP NRVTGSGFWK ATGIDKAIYS VKEPHECIGL 120 KKSLVYYRGS AGKGTKTDWM MHEFRLPANK STNPSVTRNT TQEAVRFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-44 | 21 | 146 | 22 | 145 | NAC domain-containing protein 19 |
3swm_B | 1e-44 | 21 | 146 | 22 | 145 | NAC domain-containing protein 19 |
3swm_C | 1e-44 | 21 | 146 | 22 | 145 | NAC domain-containing protein 19 |
3swm_D | 1e-44 | 21 | 146 | 22 | 145 | NAC domain-containing protein 19 |
3swp_A | 1e-44 | 21 | 146 | 22 | 145 | NAC domain-containing protein 19 |
3swp_B | 1e-44 | 21 | 146 | 22 | 145 | NAC domain-containing protein 19 |
3swp_C | 1e-44 | 21 | 146 | 22 | 145 | NAC domain-containing protein 19 |
3swp_D | 1e-44 | 21 | 146 | 22 | 145 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023896588.1 | 1e-117 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 2e-71 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2N9EHV8 | 1e-101 | A0A2N9EHV8_FAGSY; Uncharacterized protein | ||||
STRING | XP_010272267.1 | 4e-83 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 9e-74 | NAC domain containing protein 42 |