PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold00485-abinit-gene-0.10-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | C3H | ||||||||
Protein Properties | Length: 679aa MW: 74384.9 Da PI: 7.263 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.6e-08 | 270 | 290 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg augustus_masked-scaffold00485-abinit-gene-0.10-mRNA-1 270 PCPEFRK-GACPKGDSCEYAHG 290 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 5.97E-15 | 52 | 153 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.6E-9 | 74 | 143 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.6E-15 | 76 | 156 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.11 | 76 | 100 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 14.716 | 76 | 156 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 3.9E-4 | 76 | 106 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 1.53E-13 | 78 | 156 | No hit | No description |
PROSITE profile | PS50088 | 9.164 | 111 | 146 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.023 | 111 | 143 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50103 | 13.77 | 265 | 292 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.4E-5 | 265 | 291 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-5 | 270 | 292 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-5 | 270 | 290 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.869 | 300 | 324 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 37 | 300 | 323 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MCSGSKSKLC SSNFVMEGEF LMQNNGFFYD GSLLLELSAT DDLEAFKSEV EEKGFDVGKA 60 SFWYCRRIGS KKMAFEERTP LMIAAMYGST RVVKYIIETG KIDVNRVCGS DRVNALHCAV 120 AGGANSSLEI VKLLLDASAD ANCVNANGNK PIDLIAPALK SPSNSRRKAM ELVLKGDNSV 180 GEGGQFVTEE EELQRSVMPQ GTEKKEYPID ISLPDINNGI YGTDEFRMYT FKVKPCSRAY 240 SHDWTECPFV HPGENARRRD PRKYPYTCVP CPEFRKGACP KGDSCEYAHG VFESWLHPAQ 300 YRTRLCKDET GCARKVCFFA HKPEELRPVY ASTGSAMPSP KSHSAGALDM TVMSPLSLSS 360 SSLPMPTTST PPMSPLAAAS SPKGGNLWQN KVNISPPALQ LPGSRLKTAL SARDLDFEME 420 LRGLESHVNQ QQQQQLIDEI ARLSSPSCWS KEYSRIGDLK PTNLDDVFGT HDASMLSQLQ 480 GLSLKPTTPT QLQSPNALQM RQNMNQLRAS YPTNLSSSPV RKPSSFGFDS SAAVAAAVMN 540 SRSAAFAKRS QSFIDRGAGT HRPGLTAAAN SASMMSSTRS DWSSPDGKLD WGIQGDELSK 600 LKKSASFGFR NNNVVTTLSP SAVDEPDVSW VNSLVKDVSH DSSGLFGAER QQYNHGRGGH 660 ELLPQWVEQL YIEQEQMVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR796395 | 0.0 | FR796395.1 Fagus sylvatica partial zinc finger gene, exon 1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023900055.1 | 0.0 | zinc finger CCCH domain-containing protein 29-like | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A2N9GCH9 | 0.0 | A0A2N9GCH9_FAGSY; Uncharacterized protein | ||||
STRING | EMJ21413 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |