PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00465-abinit-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 323aa    MW: 37118.9 Da    PI: 4.5175
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00465-abinit-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.12.9e-15117159147
                                                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaai 47 
                                                            s ykGVr+++ +g++ AeIrdp        +r++lg+f+t+ eAa+a+ 
  augustus_masked-scaffold00465-abinit-gene-0.12-mRNA-1 117 SIYKGVRRRP-WGKYSAEIRDP-----IlgRRVWLGTFDTELEAAAAYR 159
                                                            57********.**********8.....567**********99****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-15117164IPR016177DNA-binding domain
PfamPF008471.1E-8117158IPR001471AP2/ERF domain
CDDcd000181.77E-21117158No hitNo description
PROSITE profilePS5103217.069118178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-19118163IPR001471AP2/ERF domain
SMARTSM003808.6E-15118178IPR001471AP2/ERF domain
PRINTSPR003677.6E-9119130IPR001471AP2/ERF domain
PRINTSPR003677.6E-9141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MPERKRQRLN RDNSCDTSKK NSMRKVRIIY LDPYATDSSS DDDEEYELKD ESKSFKRTVK  60
EILLPGLQHD SYTDTCPQHN SDKGKQEIST NDNQVWDDKD DGESSRFRYK SIGGRSSIYK  120
GVRRRPWGKY SAEIRDPILG RRVWLGTFDT ELEAAAAYRK RTYEIDRLLW LQKNKNSSSS  180
TDGNDKEETK GLFSPPSSPS SVLEVSTPAL LGNGIGNSNK EEDNVEQFLH NSISALLGNT  240
IIEEGSVFPI LEEEQSVLDF WEAPIISPSI LELFPQFHNQ NFNAIYINDI DAYPMPEDEW  300
GKDYDLPPVD IEFATEEFSW MRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-13110165662Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885209.10.0ethylene-responsive transcription factor ERF119-like
RefseqXP_023885210.10.0ethylene-responsive transcription factor ERF119-like
TrEMBLA0A2N9GK142e-82A0A2N9GK14_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134512027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.11e-16ERF family protein