![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | augustus_masked-scaffold00296-abinit-gene-0.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 334aa MW: 37773.7 Da PI: 8.7304 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.9e-16 | 55 | 104 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+ykGV + +grW A+I+d ++r++lg+f+ +eeAaka++ a+++++g+ augustus_masked-scaffold00296-abinit-gene-0.2-mRNA-1 55 SKYKGVVPQP-NGRWGAQIYDK-----HQRVWLGTFDEEEEAAKAYDIAALRFRGH 104 89****9888.8*********3.....5**************************97 PP | |||||||
2 | B3 | 94.8 | 5.7e-30 | 188 | 288 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliy 52 f+kv tpsdv+k++rlv+pk+ ae++ + ++++ l +ed+ g++W+++++y augustus_masked-scaffold00296-abinit-gene-0.2-mRNA-1 188 FEKVVTPSDVGKLNRLVIPKQQAEKYfplptE-GAAKGVLLNFEDSIGKVWRFRYCY 243 99*************************99963.446999****************** PP EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + +s++yvltkGW++Fvk+++Lk+gD v F+++ +++++++++ augustus_masked-scaffold00296-abinit-gene-0.2-mRNA-1 244 WSSSQSYVLTKGWSKFVKEKNLKAGDRVSFQRSMGPDKKFFIGWR 288 *******************************88667777899887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.26E-26 | 55 | 112 | No hit | No description |
Pfam | PF00847 | 4.2E-10 | 55 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-17 | 55 | 112 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-20 | 56 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.271 | 56 | 111 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-30 | 56 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-5 | 57 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-5 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-38 | 184 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.76E-30 | 186 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.43E-26 | 187 | 285 | No hit | No description |
SMART | SM01019 | 1.1E-21 | 188 | 291 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.015 | 188 | 291 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-27 | 188 | 288 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 334 aa Download sequence Send to blast |
MAMNCLDEST SGSITSSSFT VKRSMENSCQ MGSGSSAKSN SEIGIEADSK KLPSSKYKGV 60 VPQPNGRWGA QIYDKHQRVW LGTFDEEEEA AKAYDIAALR FRGHNAITNL QHPLEPNKDA 120 NELCFLNSHS KDEIVDMLRK HSYTYELEQS EYNICACHGT RKRHRDNWLM DTPVSESELF 180 DVAREYLFEK VVTPSDVGKL NRLVIPKQQA EKYFPLPTEG AAKGVLLNFE DSIGKVWRFR 240 YCYWSSSQSY VLTKGWSKFV KEKNLKAGDR VSFQRSMGPD KKFFIGWRPL NGSSFVEVLD 300 KVKSSASLQA VKVVRLFGVN ILETPTSSFV TNNI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-51 | 185 | 293 | 11 | 120 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023903809.1 | 0.0 | AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9ZWM9 | 1e-119 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A2N9GQE5 | 1e-178 | A0A2N9GQE5_FAGSY; Uncharacterized protein | ||||
STRING | XP_010265251.1 | 1e-133 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-120 | related to ABI3/VP1 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|