PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold00231-abinit-gene-1.4-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | C2H2 | ||||||||
Protein Properties | Length: 182aa MW: 20930.8 Da PI: 5.7551 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.5e-05 | 31 | 53 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C++ F++ L H++ H augustus_masked-scaffold00231-abinit-gene-1.4-mRNA-1 31 YECVYCKRGFTTAQALGGHMNIH 53 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.7E-6 | 29 | 58 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.5E-4 | 29 | 55 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.2E-6 | 31 | 55 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.845 | 31 | 58 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 33 | 53 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MEYNCQEDSK SSSEESDRSV QNDDMGTGRS YECVYCKRGF TTAQALGGHM NIHRKDRVKT 60 RPSSVPSVSS KADENYVNLR SYTSIQSYPP HYNSTAPEVQ VSSQVTFPVS AWHMRPPNTQ 120 HTDHVQNNPL HPNLFEEDWR RSLSLQVGPT HVVVEHDREK RREDGNEEDD ELDLELRLGH 180 YP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023875023.1 | 1e-133 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A2N9H8R0 | 3e-72 | A0A2N9H8R0_FAGSY; Uncharacterized protein | ||||
STRING | EOX94522 | 2e-69 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1686 | 30 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 2e-13 | C2H2 family protein |