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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold00102-abinit-gene-1.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 256aa MW: 28220.6 Da PI: 5.7807 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.3e-17 | 72 | 121 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 + y+GVr + +++Wv+e+r+p++ ++r++lg++ t+e+Aa+a++ a++ l+ augustus_masked-scaffold00102-abinit-gene-1.2-mRNA-1 72 PVYRGVRKRN-KNKWVCEVREPKK---KTRIWLGTYPTPEMAARAHDVAALVLR 121 68*****888.7*********854...6**********************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.5E-13 | 72 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-29 | 73 | 132 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.14 | 73 | 130 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-24 | 73 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-20 | 73 | 132 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.5E-7 | 74 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.26E-26 | 74 | 132 | No hit | No description |
PRINTS | PR00367 | 1.5E-7 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MNIFSQCSDP YPFGSDSFSF DKAETSSLSD AGSGTSASTH KGAHYSDEEV KLASRTPKKC 60 AGRRVFKETR HPVYRGVRKR NKNKWVCEVR EPKKKTRIWL GTYPTPEMAA RAHDVAALVL 120 REKSACLNFA DSAWRLRMPA SKDAMDIRRA AAEAAEAFRP REFGGQCGGA GGDDDEGLKN 180 CEEVSGSYGE SAVVEKKPSV QGNVVYLDEE ELYDMPGLLV SMAEGLLISP PPCVGYSNNI 240 NWDDMESDAQ VTLWNF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 94 | RKRNKNKWVCEVREPKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023891811.1 | 1e-163 | dehydration-responsive element-binding protein 1A-like | ||||
Swissprot | Q9FJ93 | 7e-63 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A2N9FF11 | 1e-112 | A0A2N9FF11_FAGSY; Uncharacterized protein | ||||
STRING | evm.model.supercontig_74.84 | 7e-89 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 2e-60 | C-repeat/DRE binding factor 1 |
Publications ? help Back to Top | |||
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