PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00087-abinit-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 306aa    MW: 33197.2 Da    PI: 9.9433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00087-abinit-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-20155204255
                                                   AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                            y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g
  augustus_masked-scaffold00087-abinit-gene-0.8-mRNA-1 155 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 204
                                                           69*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.31E-16154213No hitNo description
PfamPF008473.0E-14155204IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21155212IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-29155212IPR001471AP2/ERF domain
SMARTSM003803.3E-33155218IPR001471AP2/ERF domain
PROSITE profilePS5103222.866155212IPR001471AP2/ERF domain
PRINTSPR003671.3E-10156167IPR001471AP2/ERF domain
PRINTSPR003671.3E-10178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MYNNNHNNHA LQFPTVPFFP KSEPIFSPDT FMFLTETSCF YGSFCDTQFS IPSVSASNHL  60
KFLNPLPISA DLSLCEINSH EAKPETEMEM GMEIPPVLDG IAAVVGQHVL FGGKNTKKTE  120
NHNNNKTENS GLVSISERFG AEKKNSSSSG GPQKSYRGVR KRPWGRWSAE IRDRIGRCRH  180
WLGTFDTAEE AARAYDAAAR RLRGSKARTN FEIPSVLPLV VASSSTSTSS CSSSDANKRA  240
KKNKKAAGKN GRKCSVVTSV AQLFSSNSAI AGSKDGNNVE LELKLGVNFG NRSSTSTSTS  300
TPSMVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-18154213161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023892529.11e-162ethylene-responsive transcription factor ERF084
SwissprotQ9M8M53e-28ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A3S8T9901e-81A0A3S8T990_FRAAN; Transcription factor ERF63
STRINGXP_004305488.11e-83(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.17e-27ERF family protein