PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00079-abinit-gene-1.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 701aa    MW: 76250.3 Da    PI: 6.7828
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00079-abinit-gene-1.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07278298526
                                                           --SGGGGTS--TTTTT-SS-SS CS
                                               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                                           +C++f++ G C++Gd C +aHg
  augustus_masked-scaffold00079-abinit-gene-1.8-mRNA-1 278 PCPDFRK-GACRRGDMCEYAHG 298
                                                           8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002045.36E-1556135No hitNo description
SuperFamilySSF484031.52E-1556137IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.8E-1756136IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.14957137IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00275787IPR002110Ankyrin repeat
PfamPF127962.2E-957126IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.9892127IPR002110Ankyrin repeat
SMARTSM002480.005392124IPR002110Ankyrin repeat
SMARTSM003564.0E-6273299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4278300IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5278298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582278300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4306336IPR000571Zinc finger, CCCH-type
SMARTSM0035665308331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MNHLTVETED TFASLLDLAA NNDIEGFKRS VERDPSGIDE IGLWYGRKKG SKQMVNERRT  60
PLMVAATYGS IDVMKLILSL SDADVNRPCG HDKSTALHCA ASGGAVNAID AVKLLLVSGA  120
NPNLVDANGH RPVDLIVVPP KLQDVKLSLR ELLTTNGPCI EHNLTVLTGT LSMNSSPLSS  180
SPDNGSPSAS DFISSPTKLK FGDYSISSAS EKKEYPVDPS LPDIKNSIYS TDEFRMYSFK  240
VRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP DFRKGACRRG DMCEYAHGVF  300
ECWLHPAQYR TRLCKDGTSC ARRVCFFAHT AEELRPLYVS TGSAVPSPRS STSGATAMDF  360
AAAMSLLPGS PSSVSVMSPS AFTPPMSPSA NGMSHSGWPQ PNVPALHLPG SNFQSSRLRS  420
SLNARDIPAE DFDMDFDVQQ QQLINELSCL SQPSMSSNSL NRSGRFKSLT PSNLDDLFSS  480
ESLSPRYSDQ ALASAVFSPT HKSAVLNQFQ QQQQSMLSPV NTSFSPKNVD HPLLQASFGV  540
PSSGRMSPRN VEPISPMSSR MSILAQRDKQ QQFRSLSSRE LGSNSASIVG SPVNSWSKWG  600
SSNGKPDWAV STDELGKHRR SSSFELGNNG EEPDLSWVQS LVKESPTDIK EKLATPVSSA  660
AATASSSEGS NMNSQIESVD HAVLGAWLEQ MQLDHLVAQQ N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14552GRKKGSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914163.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2N9IVI50.0A0A2N9IVI5_FAGSY; Uncharacterized protein
STRINGEMJ058250.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]