PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold00062-abinit-gene-0.1-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bZIP

Protein Properties

Length: 196aa MW: 22538.8 Da PI: 5.5536

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold00062-abinit-gene-0.1-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.4	5e-16	83	136	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +++rr+++NRe+ArrsR RK++ ++eL v L +eN++L+++l++ ++ +k augustus_masked-scaffold00062-abinit-gene-0.1-mRNA-1 83 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLIDKLNHVSESHDK 136 689*******************************************99987766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.8E-15	79	143	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.726	81	144	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-13	83	133	No hit	No description
Pfam	PF00170	9.4E-14	83	135	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.4E-13	83	156	No hit	No description
CDD	cd14702	2.22E-19	84	135	No hit	No description
PROSITE pattern	PS00036	0	86	101	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MQPSEVTALH YLASSNNPSP YPANFDMTQN TASAFQFNQF PNPLYNFQLP PQFHDLNPHS 60 SSFSSNSTSD EADEQQLSLI NERKQRRMIS NRESARRSRM RKQKHLDELW SQVVWLRNEN 120 HQLIDKLNHV SESHDKVVQE NAQLKEEASE LRQMLTDMQL SSPFPALRDL DDPCNTAYLR 180 AESSNQSATS SMDLLG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	102	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00389	DAP	Transfer from AT3G30530	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023928373.1	1e-129	basic leucine zipper 43-like
Swissprot	Q9FMC2	7e-49	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A2N9HGJ9	1e-114	A0A2N9HGJ9_FAGSY; Uncharacterized protein
STRING	POPTR_0004s10990.1	9e-96	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1604	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	2e-58	basic leucine-zipper 42

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]