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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
augustus_masked-scaffold00060-abinit-gene-1.16-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
LBD |
Protein Properties |
Length: 288aa MW: 32151.1 Da PI: 8.1217 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
augustus_masked-scaffold00060-abinit-gene-1.16-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 120.4 | 1e-37 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeered 56
aCaaCk++r+kC+++C+lapyfpa+++++f++vhk+FG+snv+k+lk+l+eeer++
augustus_masked-scaffold00060-abinit-gene-1.16-mRNA-1 14 ACAACKHQRKKCTESCILAPYFPANRSREFQAVHKVFGVSNVTKILKNLREEERKE 69
7******************************************************* PP
DUF260 57 amsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
a++slv+eA++r++dPv G +g ++++ +l++ k++ ++ +++
augustus_masked-scaffold00060-abinit-gene-1.16-mRNA-1 70 AVESLVWEACWRQKDPVLGPYGEYTRVFDELKNYKSHQSQKENQ 113
*********************************99988877776 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MQRNNNGAQA ANPACAACKH QRKKCTESCI LAPYFPANRS REFQAVHKVF GVSNVTKILK 60 NLREEERKEA VESLVWEACW RQKDPVLGPY GEYTRVFDEL KNYKSHQSQK ENQLMPGGGI 120 GYKVVDPNLM GWGETNGIHD EGMANGGEVV GNTLNYNNLP NNHGNYNNLP NNNGNGIVDS 180 NLYGYSLDYE DKVIGQETVA SGGVPLQQNS INGFNHQQYY HPERGFKACS LGGTQEPYTR 240 GALAFSDIEA SFFKRSFLLF FLIASVQWRG AHFFKRSLLL FILIGVGA
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5ly0_A | 2e-21 | 15 | 111 | 12 | 103 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-21 | 15 | 111 | 12 | 103 | LOB family transfactor Ramosa2.1 |