PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00039-abinit-gene-2.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 264aa    MW: 29328.7 Da    PI: 4.6559
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00039-abinit-gene-2.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19120171256
                                                   AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                                           +y+GVr+++ +g+++AeIrd    + k +r++lg+f taeeAa a+++a++k++g+
  augustus_masked-scaffold00039-abinit-gene-2.3-mRNA-1 120 HYRGVRRRP-WGKYAAEIRDsT--R-KGARVWLGTFNTAEEAALAYDKAALKIRGH 171
                                                           7********.**********32..2.24**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-31119179IPR001471AP2/ERF domain
SMARTSM003801.6E-36120184IPR001471AP2/ERF domain
PROSITE profilePS5103223.709120178IPR001471AP2/ERF domain
CDDcd000187.62E-29120178No hitNo description
PfamPF008471.1E-14120171IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-23120180IPR016177DNA-binding domain
PRINTSPR003674.9E-11121132IPR001471AP2/ERF domain
PRINTSPR003674.9E-11144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAENGEDYAA SGAMLENVWA SFIGGDGAGE GTKDTSEISN SWDELHSLDG RDGSMEVLQR  60
LPSLGRWISM GAEAWEELLD GISPANNMQQ SCNDKLESTS ATNSCLLETT VRVEKVATRH  120
YRGVRRRPWG KYAAEIRDST RKGARVWLGT FNTAEEAALA YDKAALKIRG HKAYLNFPLE  180
TVAKALGIDV NNSSITSHLD EKETFLGCSE KVYNPRKRVL REWEQDVSMM TEQPALKRMA  240
GNEFDVVEFQ DLGSDFLDSL LSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-27119181466ATERF1
3gcc_A2e-27119181466ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908479.10.0ethylene-responsive transcription factor ERF091
TrEMBLA0A2N9GFM91e-155A0A2N9GFM9_FAGSY; Uncharacterized protein
STRINGEOY281131e-115(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.15e-37ERF family protein