PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05782.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 445aa    MW: 47622.1 Da    PI: 8.8255
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05782.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS244.73.8e-7510440466357
                          GRAS  66 psetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslR 143
                                   +s+++    + +  a+ +f+++ P+l+f+hltaNqaIl+aveg++r+Hi+D+d+ +G+QWp+Llqa+++R+   +gpp++R
  Zpz_sc05782.1.g00010.1.am.mk 104 SSSSAAAARTVSSGAYLAFNQIAPFLRFAHLTANQAILDAVEGARRIHILDLDAAHGVQWPPLLQAISERAdpaAGPPEVR 184
                                   333333335666677888****************************************************988888***** PP

                          GRAS 144 iTgvgspesgskeeleetgerLakfAeelgvpfefnvl.............vakrledleleeLrvkpgEalaVnlvlqlh 211
                                   iTg g+    ++++l +tg+rL+ fA+++++pf f++l             +++++++    +L+++p+E+l Vn+v+ lh
  Zpz_sc05782.1.g00010.1.am.mk 185 ITGAGA----DRDTLLRTGSRLNAFARSIHLPFCFTPLllscatsnqevagASTTTDSCVATTLELHPDETLTVNCVMFLH 261
                                   ******....9***************************999999999887666678888899******************* PP

                          GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvEre 288
                                   +l   +    +e  ++Lk vk +sP vv+++e+e   ++     ++ +r++ a+++ysa+f++lea++p+ s+er  vE+e
  Zpz_sc05782.1.g00010.1.am.mk 262 KLG-GP----DELAAFLKWVKAMSPAVVTMAEREPAGGGWdrvdELPRRVAVAMDHYSAVFEALEATVPPGSRERLLVEQE 337
                                   **8.33....33467*******************55533224449************************************ PP

                          GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                                   +lgrei+ +++ +g +     + le+W ++ ++aGF+p pls +a++qa+lllr ++ s+gy v+e +++
  Zpz_sc05782.1.g00010.1.am.mk 338 VLGREIEAALSYSGGR---WWRGLERWGAAARAAGFTPRPLSAFAVSQARLLLRLHYpSEGYLVQEARDA 404
                                   ************9998...7899******************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.9571400IPR005202Transcription factor GRAS
PfamPF035141.3E-72104404IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MPATFLLIHP LMLLASHHHR RLRPPPPLLQ VKKRAWTAAA GKATAMLGSL HHSSSSSDTD  60
NDNKNGNTNT DNNNNASGVL AVVPSARDLA SGRVAPGLLP SSSSSSSAAA ARTVSSGAYL  120
AFNQIAPFLR FAHLTANQAI LDAVEGARRI HILDLDAAHG VQWPPLLQAI SERADPAAGP  180
PEVRITGAGA DRDTLLRTGS RLNAFARSIH LPFCFTPLLL SCATSNQEVA GASTTTDSCV  240
ATTLELHPDE TLTVNCVMFL HKLGGPDELA AFLKWVKAMS PAVVTMAERE PAGGGWDRVD  300
ELPRRVAVAM DHYSAVFEAL EATVPPGSRE RLLVEQEVLG REIEAALSYS GGRWWRGLER  360
WGAAARAAGF TPRPLSAFAV SQARLLLRLH YPSEGYLVQE ARDAAAAVRF VMAVVGRHRH  420
RRGFYSPHCM HSCTPAAATT TSTTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-3711839697353Protein SCARECROW
5b3h_D3e-3711839697353Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05782.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810768.11e-178protein MONOCULM 1-like
RefseqXP_025810769.11e-178protein MONOCULM 1-like
SwissprotQ84MM91e-150MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A2T7DWM21e-176A0A2T7DWM2_9POAL; Uncharacterized protein
TrEMBLA0A2T8JCB91e-176A0A2T8JCB9_9POAL; Uncharacterized protein
STRINGSi008068m1e-165(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.13e-63GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]