PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05546.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 292aa    MW: 32030.6 Da    PI: 8.709
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05546.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS47.92.3e-1515424187173
                          GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetge 163
                                    sP+++++  +aN aI eav  ++++H +Dfd+  + Q +aL q La  p+   sl++T++ +p+s     ++ +l +++e
  Zpz_sc05546.1.g00010.1.am.mk 154 GSPCFRLALHAANVAIIEAVGDHRAIHLVDFDVRAP-QRAALVQYLAGVPG--TSLKVTAITDPTSPfaqsQTATLPAVEE 231
                                   59*******************************987.88********9655..59********998889999999****** PP

                          GRAS 164 rLakfAeelg 173
                                   rL+k+A+++g
  Zpz_sc05546.1.g00010.1.am.mk 232 RLKKLADRVG 241
                                   ******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.9703.8E-4137IPR029061Thiamin diphosphate-binding fold
SuperFamilySSF529224.85E-83180IPR009014Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II
PfamPF027802.1E-83780IPR033248Transketolase, C-terminal domain
Gene3DG3DSA:3.40.50.9203.2E-73879IPR009014Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II
PfamPF035148.0E-13154241IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKATIRSENP VVLFEHVLIY NLKEKTPDEE YICCLEEAEM VRPGERVSIL TYSRMRYHVT  60
QAAKTLVNKG YDPEVINIRP ARCCPALSPL PRRSPVHSCR EPTPPAPHPD SCTPVFQPPA  120
ASPPWSHRRG HAWRWPACGE QRGPGGADCS GVDGSPCFRL ALHAANVAII EAVGDHRAIH  180
LVDFDVRAPQ RAALVQYLAG VPGTSLKVTA ITDPTSPFAQ SQTATLPAVE ERLKKLADRV  240
GNAGLDDGGS QGRGRRELLQ HPCSAQSQKG TRRQRQVVAV PFFFFLIVGK ID
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05546.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2492236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.12e-10SCARECROW-like 1