PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zpz_sc05527.1.g00010.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 196aa MW: 20176.4 Da PI: 9.2554

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc05527.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	59.6	6.3e-19	1	33	30	62
zf-Dof 30 ryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 r+fCkaCrryWt+GGalrnvPvGgg+r+n k+ Zpz_sc05527.1.g00010.1.am.mk 1 RHFCKACRRYWTRGGALRNVPVGGGCRRNTKRA 33 9***************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	17.28	1	31	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-11	1	31	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.3E-13	1	31	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
RHFCKACRRY WTRGGALRNV PVGGGCRRNT KRASKKASRQ GAAGGATAAS SSSSTTATST 60 TVTTTTTSSA AAAEVLASMH AQLPHLGLPP AVALEASLEG HHHYLPLQMQ QQFLQQGLDG 120 YHFTDGDGGG VFADGLPRGV ASGLLAQLAA VKMEGHNNGG AVAAAHEQSY WPGSGGNEWP 180 TEFLSGFSLS SSGNVL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc05527.1.g00010.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001333768.1	8e-62	uncharacterized protein LOC103650524
TrEMBL	A0A0A9DMN5	3e-69	A0A0A9DMN5_ARUDO; Uncharacterized protein
STRING	Pavir.Ca02598.1.p	6e-63	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	8e-16	Dof family protein