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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc05518.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LBD | ||||||||
Protein Properties | Length: 94aa MW: 10047.6 Da PI: 9.5351 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 56.3 | 9.6e-18 | 45 | 90 | 1 | 46 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46 +CaaCk+lrr+Ca++C+++ yf +p+kfa+vhk+FGasnv+k+l Zpz_sc05518.1.g00010.1.am.mk 45 PCAACKLLRRRCAQECPFSLYFSPLEPHKFAAVHKVFGASNVSKML 90 7*******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.331 | 44 | 94 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-17 | 45 | 90 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MSTASHWQDH EVGRKIKRES AAAAADRMTA AAAAGAGSAL NTITPCAACK LLRRRCAQEC 60 PFSLYFSPLE PHKFAAVHKV FGASNVSKML LVCN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-17 | 30 | 90 | 2 | 56 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-17 | 30 | 90 | 2 | 56 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc05518.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134341 | 4e-64 | AC134341.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0027N19, complete sequence. | |||
GenBank | AP014961 | 4e-64 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 4e-64 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977134.1 | 1e-45 | LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 4e-33 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A368S0C8 | 2e-44 | A0A368S0C8_SETIT; Uncharacterized protein | ||||
STRING | TRIUR3_18328-P1 | 6e-43 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-32 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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