PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05408.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 341aa    MW: 37136.9 Da    PI: 10.5345
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05408.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.73.4e-1437123186
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtse 74 
                                   +W++ e+ aL+ a  ++  +++rg+l++++W+ev++++       ++r   r+ +qCk++ + l+k+yk++++++      
  Zpz_sc05408.1.g00020.1.am.mk  37 CWSDGETAALVSAWGSRYIEVNRGNLRQKQWQEVADAVnsrrgasARRRPPRTDVQCKNRVDTLKKKYKAERARNAP---- 113
                                   7*****************************************999999999************************97.... PP

                      trihelix  75 ssstcpyfdqle 86 
                                     s +++f++l+
  Zpz_sc05408.1.g00020.1.am.mk 114 --SGWSFFQELH 123
                                   ..4799***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575122No hitNo description
PfamPF138371.8E-2535125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEVREMAMAA AAAAAASGGG GCKLPPPNPN LPYREDCWSD GETAALVSAW GSRYIEVNRG  60
NLRQKQWQEV ADAVNSRRGA SARRRPPRTD VQCKNRVDTL KKKYKAERAR NAPSGWSFFQ  120
ELHHLVGPTL DASASKRPSP SPSPQFALPF HPPPIRKPPS PSLSPSPPPP MALPLPNYRR  180
GSPLPAAALI QQEAAAAAAA MSDSGDSSDA GGKNNYNSQQ SPLRSMSALS GHNEKRNRHE  240
TGRSSDKGFR ELARAIDAFA EMYERVENAK QNHALEMERQ RINFLKQLEV KRMENFVDAH  300
VNLMRAKRTK KISGTAADGA AGVELVATIA AQPFFSTSTL H
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05408.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440242.11e-147trihelix transcription factor ASIL2
TrEMBLA0A0A9IAS81e-152A0A0A9IAS8_ARUDO; Uncharacterized protein
STRINGSb09g028350.11e-146(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-28sequence-specific DNA binding transcription factors