PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05288.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 488aa    MW: 53662 Da    PI: 11.2837
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05288.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS91.31.6e-286126251373
                          GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                                   ++ + r+  a+++++  +d++++ lp+ se+r+++E+e +g++++nv+a+eg er+er+e  ++W +r+++aGF+pv+++e
  Zpz_sc05288.1.g00010.1.am.mk   6 GDVVGRLRAAFNFMWIPYDAVDTFLPKGSEQRRWYEAE-VGWKVENVLAQEGVERVERQEDRARWGQRMRNAGFRPVAFNE 85 
                                   566789********************************.****************************************** PP

                          GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   +aa ++k++l++++  g+ ++ e++ +vl+Wk++++v++SaW
  Zpz_sc05288.1.g00010.1.am.mk  86 EAAGEVKAMLNEHA-AGWGMKREDDDIVLTWKGHNVVFASAW 126
                                   **************.8899999******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.7181108IPR005202Transcription factor GRAS
PfamPF035145.5E-266126IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
ADFTAGDVVG RLRAAFNFMW IPYDAVDTFL PKGSEQRRWY EAEVGWKVEN VLAQEGVERV  60
ERQEDRARWG QRMRNAGFRP VAFNEEAAGE VKAMLNEHAA GWGMKREDDD IVLTWKGHNV  120
VFASAWAPFA LVDRPAFTAG LTDSRRGLMR SGPTKSITLI TQDGPRRHAA VVGWLAAKLK  180
GPPTLGCWYL FIGMALVSKQ ATATPARRAI GGWARASCSS PKDRHVVAHR KLEENKKKRS  240
FHSLLGTEPV SVSSCESTLP PCSSRHLRLS CSAKRGRRTR RGPGSNVTNH RCLPAMRLIW  300
ASTFSRSLDL ASERPGQRLR HFQALAEKAE SGRRRVHPSR FTYSLHRRQK GQPHRSAGLT  360
TASTVSDTAR LPPGERGQRR RMDVAVTERI MRPAAVAVAT ARTLKFSGEA MEAHASARRE  420
FYSAARVAVP VSIWDATGRV CFVEGGAVLG AHACRVGKEP GAPATSAAPS FPQTSVSGST  480
DHGIKSWD
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05288.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037501e-134AP003750.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1174_G05.
GenBankAP0051491e-134AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149631e-134AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-134CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.19e-52GRAS family protein