PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05262.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 683aa    MW: 73354.1 Da    PI: 11.3625
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05262.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011515537123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++Cp Cg +F +   L  H+++H
  Zpz_sc05262.1.g00010.1.am.mk 515 HECPVCGLRFENGQALGGHMSRH 537
                                   79********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003556.1300322IPR015880Zinc finger, C2H2-like
PfamPF139127.4E-7300324IPR007087Zinc finger, C2H2
SuperFamilySSF576675.32E-5301322No hitNo description
PROSITE patternPS000280302322IPR007087Zinc finger, C2H2
SuperFamilySSF576675.32E-5456483No hitNo description
SMARTSM003553.4461483IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.016461488IPR007087Zinc finger, C2H2
PfamPF139121.9E-9461485IPR007087Zinc finger, C2H2
PROSITE patternPS000280463483IPR007087Zinc finger, C2H2
SMARTSM003550.047515537IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-9515539IPR007087Zinc finger, C2H2
PROSITE profilePS501579.993515542IPR007087Zinc finger, C2H2
PROSITE patternPS000280517538IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MPVLGRDTAL AVELEPDGDQ RLVVGRSEAG LHRLLSKQKE LIAAKVAVAD VLVEAAARRW  60
VAAKSELAGW GSRAWRGGAA PGARREGRRR SSRRGGRARR APCSQGHQCR SEQKSRSLAE  120
AAKAGVVATR PHRGRRSLPS SGQVVTFRRD LDGREGFTDT RRNARCAPPS RSRFLVLRDA  180
VEATAASLCQ VAVVEPSQSS ALAGRGGTAR ERRDVAKDRL EPGGVTTSLR QLARLTLEDS  240
SALSGSSSAG VSTDPLVARS GEGQAPLGGR RPGPLPLLRG RGFELGLGVV GVVMFLRPQR  300
ECDICGVVFP TGPALGGHAT KHRDHRGGGA RATDDWVWPV PERVVPAGGE PPVLLQLFLA  360
PNLLSHLNQR ALASTISRQI SSNPPDPINA IRLEEMKHPR EEEEEEVPVS LELSLSTDSS  420
ASRGTSSTGG ATSTAPSTAA ANKRARRRRG PLVATSGEGD FVCKTCLRAF PTFQALGGHR  480
TSHLRGRGRC LVSAKALEQH KADSAKPPEP PGQQHECPVC GLRFENGQAL GGHMSRHHEE  540
KAGDCGADES TTTGCGERRR IVTDEPPVLL DLFLCGVRPA RPARHATPRA RPYPNRRFRP  600
RLRLSDGRTS RRQRGVAYVR TAVERGVQAR LPSVYVKGKP MHDEAILQHQ QQQADSLAPS  660
LILLSSKLRS SGVALSFSPA IFE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05262.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-18C2H2 family protein