PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05065.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 421aa    MW: 44830.8 Da    PI: 6.6987
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05065.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.93e-09159237170
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekk 70 
                                   +Wt  e+laL++ +  +++  +r+ ++ ++W+ v++++          +r  +r + +Ck +we l+ +y +++++e +
  Zpz_sc05065.1.g00030.1.am.mk 159 EWTPAETLALVAEVAAVDDGWSRSFSAFQKWAMVAENLaasvvfasgPARRGKRAAGECKRRWEALAAEYGAVRRWEVR 237
                                   5*******************************************999777779**********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.795152225IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MQRASQRSRS PPVWGPPLSR PASDTTSARD PQGSTWLRTR APRRTRTVST LARASSSLPH  60
RLTAPAPAHR IAPASMDPPA ADSRCVVQAL RASSNTRPAP PPPIKSLHSP AAKDHAPGAS  120
SSSSRPPKPK RRLPRPTALP LGPAPPSPRR TRSGESAPEW TPAETLALVA EVAAVDDGWS  180
RSFSAFQKWA MVAENLAASV VFASGPARRG KRAAGECKRR WEALAAEYGA VRRWEVRTGG  240
GYWKMSAAAR RKAGLPSEFD AEVYGAMDAL VRVEEALLAN AVAGGGAGEE VEGLVGSGAG  300
VAVGEENRGE PEICKEQVKK DELVDEVQKD ESGDEEEDED GRDDEEATKA DPGNADASNT  360
IEASKYADEN HTPSYSLSPD AMGTTRQKAD DLIKSLGGLL SYLNQFTELI KETGFENVGM  420
T
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05065.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701598.11e-105trihelix transcription factor ASR3
TrEMBLA0A368PHJ71e-103A0A368PHJ7_SETIT; Uncharacterized protein
STRINGSb04g004960.11e-103(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-15sequence-specific DNA binding transcription factors