PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc05052.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 364aa    MW: 40781.3 Da    PI: 5.9167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc05052.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-10212254754
                                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                   ++ErrRR+r+N++++ Lr+++Pk +      K++  ++L  +++Y+k+L
  Zpz_sc05052.1.g00020.1.am.mk 212 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSMLGDTIDYMKEL 254
                                   79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.60E-4198259No hitNo description
PROSITE profilePS5088815.091205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15209272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-12211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-8212254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-15212271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048735.13E-4306344No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MIKSLKSAAR SHHHGHEREM DGEVVISHSQ EKKRHTQQLA LLHLAGEDWT RDRASNRAAE  60
EMELDEQAFL EEILSLRRDA WDCTDAVGDF FFTAAPAMES DCSFQEHHQR PPNSLSVLPT  120
FTASYDHRKP PPAPGFDCLS DDVYGASTFG GPNAGDYGGE MGFLHVIEPK APLTEGTGLG  180
ICKVEPGLPD SKPPAPLSKK KRVDGMPSKN LMAERRRRKR LNDRLSMLRS VVPKISKMDR  240
TSMLGDTIDY MKELLERIKQ LQEEMDLQEQ QEAPGVLRVF RELNPNEMVA RNTPKFEVER  300
KEGGETTVEI CCAAKPGLLM STVSTLDTLG LDIQQAVVSC FNDFGMHASC FKVNYALFLE  360
LHQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199219KKRVDGMPSKNLMAERRRRKR
2213220ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc05052.1.g00020.1.am.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0998891e-163FP099889.1 Phyllostachys edulis cDNA clone: bphyst008e05, full insert sequence.
GenBankFP1006431e-163FP100643.1 Phyllostachys edulis cDNA clone: bphyst017o19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142220.11e-135uncharacterized LOC100274388
TrEMBLA0A3L6S1271e-136A0A3L6S127_PANMI; Transcription factor bHLH93-like isoform X2
STRINGSb10g030470.11e-129(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-52beta HLH protein 93