PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04829.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 264aa    MW: 27507.5 Da    PI: 10.1735
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04829.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.0006688110123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C  Cg  Fs    L  H+r+H
  Zpz_sc04829.1.g00010.1.am.mk  88 HQCAVCGLEFSMGQALGGHMRRH 110
                                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.0E-104366IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7234471IPR007087Zinc finger, C2H2
SMARTSM003551.14466IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-486115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.29E-686115No hitNo description
PfamPF139125.0E-1088112IPR007087Zinc finger, C2H2
SMARTSM003550.4488110IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.15488115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MTPARQEAEE SKEMEGLRAN ADALLSLSSS SSSSRKAMAA VGVFECKTCR RRFPSFQALG  60
GHSTSHTRLQ ARTLGDHPPQ RDGRARMHQC AVCGLEFSMG QALGGHMRRH RGEAPPAVAA  120
RQQEEEAMPD LNFPLLEEDG GGSGGRTDQE PSSSGDTSAS GAASATLPQG ESAGLGGGAA  180
AADEVKARDD EPRRSGRSRT SRMKLDVGRL LPAHTGPREG AVRRGGRWLG GSVGRRLGGS  240
SRRRLGAESR EGVAGAVGLG EGVG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04829.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817787.14e-56zinc finger protein ZAT12-like
TrEMBLA0A2S3HQN89e-55A0A2S3HQN8_9POAL; Uncharacterized protein
TrEMBLA0A2T7DEP59e-55A0A2T7DEP5_9POAL; Uncharacterized protein
TrEMBLA0A453FW537e-55A0A453FW53_AEGTS; Uncharacterized protein
STRINGBRADI2G54500.17e-51(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.15e-22C2H2 family protein