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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Zpz_sc04773.1.g00010.1.am.mkhc |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family |
Trihelix |
| Protein Properties |
Length: 374aa MW: 41850.6 Da PI: 9.5243 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zpz_sc04773.1.g00010.1.am.mkhc | genome | ZGD | View Nucleic Acid |
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| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 70.1 | 4.3e-22 | 282 | 362 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79
+W+ +e++ Li++r em++++++ k +++lWee+s m +g +r+p qCk+ w +l ++y++ k+ e+++ +t+
Zpz_sc04773.1.g00010.1.am.mkhc 282 KWKPEEIKNLIQMRGEMNDKFQSVKGRMALWEEISGSMLNQGTSRTPAQCKSLWTSLVQKYEESKRDEESK-----KTW 355
7*****************************************************************99984.....78* PP
trihelix 80 pyfdqle 86
pyf+ ++
Zpz_sc04773.1.g00010.1.am.mkhc 356 PYFSAMD 362
*****98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 374 aa
Download sequence Send
to blast |
MLGVSHLRNR RVLSNGFVSL GKQDFQLMYS DGDKAFGTST DLCIDERLRI ASDGIIFVSM 60
EIFRPHREHA STQSGLQGKF KITTRCLWLD NGRLLDALYK AAHAALSSCP VNCPLSHMER 120
MVSEILRKMV RKYSGKRPDV IAVATENTTV GFTEHLEAKS CGNTATSHLS RSPARSLEGS 180
HKTRPDNPEM EIEEAIPEVE RTTPNDATTS SNGEAFFSSD LHQPKTLEHF WESFKSPTAV 240
KIARIVNGSA QGNKLKVGKI GIMSKDSNQS APAPVKSSKK NKWKPEEIKN LIQMRGEMND 300
KFQSVKGRMA LWEEISGSML NQGTSRTPAQ CKSLWTSLVQ KYEESKRDEE SKKTWPYFSA 360
MDQILSREGE MATK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
