PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc04773.1.g00010.1.am.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 374aa MW: 41850.6 Da PI: 9.5243

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc04773.1.g00010.1.am.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.1	4.3e-22	282	362	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 +W+ +e++ Li++r em++++++ k +++lWee+s m +g +r+p qCk+ w +l ++y++ k+ e+++ +t+ Zpz_sc04773.1.g00010.1.am.mkhc 282 KWKPEEIKNLIQMRGEMNDKFQSVKGRMALWEEISGSMLNQGTSRTPAQCKSLWTSLVQKYEESKRDEESK-----KTW 355 7****************************************************************99984.....78 PP trihelix 80 pyfdqle 86 pyf+ ++ Zpz_sc04773.1.g00010.1.am.mkhc 356 PYFSAMD 362 *****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.886	275	339	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.0E-5	278	341	IPR009057	Homeodomain-like
SMART	SM00717	0.0034	279	341	IPR001005	SANT/Myb domain
Pfam	PF13837	2.4E-18	281	364	No hit	No description
CDD	cd12203	3.80E-21	281	346	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009658	Biological Process	chloroplast organization
GO:0009942	Biological Process	longitudinal axis specification
GO:0060918	Biological Process	auxin transport
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MLGVSHLRNR RVLSNGFVSL GKQDFQLMYS DGDKAFGTST DLCIDERLRI ASDGIIFVSM 60 EIFRPHREHA STQSGLQGKF KITTRCLWLD NGRLLDALYK AAHAALSSCP VNCPLSHMER 120 MVSEILRKMV RKYSGKRPDV IAVATENTTV GFTEHLEAKS CGNTATSHLS RSPARSLEGS 180 HKTRPDNPEM EIEEAIPEVE RTTPNDATTS SNGEAFFSSD LHQPKTLEHF WESFKSPTAV 240 KIARIVNGSA QGNKLKVGKI GIMSKDSNQS APAPVKSSKK NKWKPEEIKN LIQMRGEMND 300 KFQSVKGRMA LWEEISGSML NQGTSRTPAQ CKSLWTSLVQ KYEESKRDEE SKKTWPYFSA 360 MDQILSREGE MATK

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MLGVSHLRNR RVLSNGFVSL GKQDFQLMYS DGDKAFGTST DLCIDERLRI ASDGIIFVSM  60
EIFRPHREHA STQSGLQGKF KITTRCLWLD NGRLLDALYK AAHAALSSCP VNCPLSHMER  120
MVSEILRKMV RKYSGKRPDV IAVATENTTV GFTEHLEAKS CGNTATSHLS RSPARSLEGS  180
HKTRPDNPEM EIEEAIPEVE RTTPNDATTS SNGEAFFSSD LHQPKTLEHF WESFKSPTAV  240
KIARIVNGSA QGNKLKVGKI GIMSKDSNQS APAPVKSSKK NKWKPEEIKN LIQMRGEMND  300
KFQSVKGRMA LWEEISGSML NQGTSRTPAQ CKSLWTSLVQ KYEESKRDEE SKKTWPYFSA  360
MDQILSREGE MATK

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250\|UniProtKB:Q72JJ7, ECO:0000269\|PubMed:15266054, ECO:0000269\|PubMed:22033332, ECO:0000269\|PubMed:25871650}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc04773.1.g00010.1.am.mkhc

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:25871650}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952680.1	0.0	uncharacterized protein LOC101761263 isoform X2
Swissprot	Q84W56	1e-113	RNJ_ARATH; Ribonuclease J
TrEMBL	K3YPU2	0.0	K3YPU2_SETIT; Uncharacterized protein
STRING	Si016284m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4996	35	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	1e-113	Trihelix family protein

Publications ? help Back to Top
Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. Plant Physiol., 2011. 155(4): p. 1678-89 [PMID:21139083] Halpert M,Liveanu V,Glaser F,Schuster G The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities. Plant Mol. Biol., 2019. 99(1-2): p. 17-29 [PMID:30511330]