PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zpz_sc04632.1.g00030.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 287aa MW: 32206.4 Da PI: 5.9481

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc04632.1.g00030.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	81	105	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk+F++ Lk H + H Zpz_sc04632.1.g00030.1.sm.mk 81 HICPfpACGKRFTSDFKLKAHVKAH 105 6799999***************998 PP
2	zf-C2H2	17.7	1e-05	148	173	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C+k + +++ L+ H++t H Zpz_sc04632.1.g00030.1.sm.mk 148 YVCPyeGCDKAYIHSYKLNLHLKTmH 173 99*********************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.7E-9	76	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.018	81	105	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.93	81	110	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	83	105	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.32E-7	84	105	No hit	No description
SuperFamily	SSF57667	2.32E-7	143	170	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.5E-10	144	173	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0031	148	173	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.016	148	178	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	150	173	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MDGHATMTET QRLAEVERER QLLLQEARVP AMAQEYARHA LQLRALSPII DFDLKQGGLH 60 YNRMSYFDET FDLDEESENY HICPFPACGK RFTSDFKLKA HVKAHEKTGA PVAVQHTSPL 120 PPPPPVEKPQ SSMKSFTAAT ASYAERPYVC PYEGCDKAYI HSYKLNLHLK TMHPEHGQEE 180 NGKHTAASHH AVNEPTYQYN YTEIADVAPN PKRSKTSSAH KSSSSKVHNV KVSSAMPTNT 240 GCGRSQWSGK ATYEDDSEET EEDPGNNLEG GWRYGSNADD DETQDEY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc04632.1.g00030.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001136556.1	1e-97	uncharacterized protein LOC100216676
TrEMBL	A0A3L6EAM6	3e-96	A0A3L6EAM6_MAIZE; Putative zinc finger protein
TrEMBL	B4FJ72	3e-96	B4FJ72_MAIZE; C2H2 transcription factor
STRING	GRMZM2G175000_P01	5e-97	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2094	38	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.3	1e-25	C2H2 family protein