PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zpz_sc04632.1.g00010.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 197aa MW: 21705.6 Da PI: 6.3692

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc04632.1.g00010.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.6e-06	57	82	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp C+k + +++ L+ H++t H Zpz_sc04632.1.g00010.1.sm.mk 57 FVCPyeGCDKAYIHSYKLNLHLKTmH 82 89*********************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.38E-6	52	82	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-10	53	82	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.829	57	87	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0055	57	82	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	59	82	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
FTSDFKLKAH VKAHEKTGAP VAVQHTPPPP PPPPLEKPQS SMKSSTAATA SYAERPFVCP 60 YEGCDKAYIH SYKLNLHLKT MHPEHGQEEN GKHTAASHHA VNEPTYQYNY AEIADTAPNP 120 KRSKTSSAHK SSSSKVHNVK VSSAMPNNIS GVRNQWSGKA TYEDDSEETE EDPGNNNLEG 180 GWRYGSNADD DETQDEY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc04632.1.g00010.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809834.1	2e-87	zinc finger transcription factor YY1-like
TrEMBL	A0A3L6RD38	2e-87	A0A3L6RD38_PANMI; Putative zinc finger protein
STRING	GRMZM2G175000_P01	3e-85	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2094	38	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.3	1e-14	C2H2 family protein