PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04554.1.g00020.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 134aa    MW: 14173.7 Da    PI: 6.7739
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04554.1.g00020.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-053153123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  + C++Cgk F ++  +  H++ H
  Zpz_sc04554.1.g00020.1.sm.mk 31 FICSYCGKKFCSPQAFGGHQNAH 53
                                  89**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-53059No hitNo description
PROSITE profilePS5015711.0113158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MDPDGAGSNL DLNLSLQPSS PAPEPEPPGY FICSYCGKKF CSPQAFGGHQ NAHKLERSLT  60
KRAPAARARQ DGQERDGAAD EQASSSRRGK EPVAIAVSST GSAASLPSHQ IRAPPEATSR  120
RDSIAEDMDL SLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04554.1.g00020.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020396330.14e-32zinc finger protein 4
TrEMBLA0A1D6I4T69e-31A0A1D6I4T6_MAIZE; Uncharacterized protein
TrEMBLA0A2T7ESI42e-30A0A2T7ESI4_9POAL; Uncharacterized protein
STRINGGRMZM2G108818_P012e-31(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-11zinc finger protein 2