PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc04533.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 235aa MW: 25185.6 Da PI: 9.001 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 106 | 128 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F++ L H+++H Zpz_sc04533.1.g00010.1.am.mk 106 YTCGYCKREFRSAQALGGHMNVH 128 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.63E-6 | 105 | 133 | No hit | No description |
PROSITE profile | PS50157 | 11.094 | 106 | 133 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-6 | 106 | 129 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 108 | 128 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MVVNVSSPLS DLLGSGSFGR LKGVLSRRKA PARLGKTCHL VFPGTASDKV DYSHNTPQAM 60 ERDHGRGLKH QHQHQQQQVA WTPGHNFGLS GCFSWPAVPQ PLTSSYTCGY CKREFRSAQA 120 LGGHMNVHRR DRARLRQCCP GYAPSPNLIA AHHRRAAAAG PPLSNLNFVP PHCAGATTTE 180 PVVYSFFSTT TTSAMKAAVQ VNLELGISGG VCGHDGAVPE EGGLDLELRL GCPLE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc04533.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU959193 | 3e-36 | EU959193.1 Zea mays clone 211832 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975075.2 | 3e-53 | transcriptional regulator SUPERMAN | ||||
TrEMBL | A0A1E5W4I1 | 3e-60 | A0A1E5W4I1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J31403.1.p | 2e-54 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 4e-17 | C2H2 family protein |