PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04462.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 116aa    MW: 12974.7 Da    PI: 8.2277
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04462.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-052749123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  + C++C++ F ++  L  H++ H
  Zpz_sc04462.1.g00020.1.am.mk 27 FICTYCDRKFYTSQALGGHQNAH 49
                                  89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.66E-82064No hitNo description
PROSITE profilePS5015710.992754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MEMEQELDLE LSLFYPSVPE EQPVGFFICT YCDRKFYTSQ ALGGHQNAHK YERTLAKRRR  60
EIAAALRRGV RVGDVAGVVS HSQRSRQLGL QPAGQSAGLL QRNVEGAGEL DLSLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04462.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984244.18e-35zinc finger protein ZAT6
TrEMBLA0A3L6S5G02e-39A0A3L6S5G0_PANMI; Uncharacterized protein
STRINGPavir.Ia03271.1.p3e-35(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-16zinc finger protein 2