PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc04438.1.g00020.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 416aa MW: 44236.3 Da PI: 8.3252

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc04438.1.g00020.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.7e-39	99	158	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++ Zpz_sc04438.1.g00020.1.sm.mk 99 PDKVLPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNA 158 78999****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	88	156	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-32	100	157	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.984	103	157	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	105	141	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MGEVCRGGGG DGLIKLFGTT IPVPEAGDAK DLQLSGGSSS GSIESDATKE NNTRQQQDTS 60 DPSPQPEVVD AEDPKSSPRQ QPGADRDEAN DRKEKLRKPD KVLPCPRCNS MDTKFCYFNN 120 YNVNQPRHFC KNCQRYWTAG GAMRNVPVGA GRRKNKNALA ASYSFLQRVR AAAMPAGGGP 180 LNTNGTVLSF GGGNHQSVGP CSEGSSNRDD RNMSGTKDHV AVSNPANGVQ HPANMNGAPM 240 WPPYSCAPIP SHRPAYYPPP GIAIPIQPVA PGYWGCMVLG GWNLPWAPVP SPTSQGLSSP 300 TSAPSVSSGA DSLTVLGKHA RPEGDEGRSH GSGKVWAPKT IRIDDADEVA KSSIWSLIGI 360 KGDKKNADMD GRKQHGTVFE PKHDAKTAEQ EMITSSPHLH ANPVALTRLL TFQEGS

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MGEVCRGGGG DGLIKLFGTT IPVPEAGDAK DLQLSGGSSS GSIESDATKE NNTRQQQDTS  60
DPSPQPEVVD AEDPKSSPRQ QPGADRDEAN DRKEKLRKPD KVLPCPRCNS MDTKFCYFNN  120
YNVNQPRHFC KNCQRYWTAG GAMRNVPVGA GRRKNKNALA ASYSFLQRVR AAAMPAGGGP  180
LNTNGTVLSF GGGNHQSVGP CSEGSSNRDD RNMSGTKDHV AVSNPANGVQ HPANMNGAPM  240
WPPYSCAPIP SHRPAYYPPP GIAIPIQPVA PGYWGCMVLG GWNLPWAPVP SPTSQGLSSP  300
TSAPSVSSGA DSLTVLGKHA RPEGDEGRSH GSGKVWAPKT IRIDDADEVA KSSIWSLIGI  360
KGDKKNADMD GRKQHGTVFE PKHDAKTAEQ EMITSSPHLH ANPVALTRLL TFQEGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc04438.1.g00020.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956784	3e-87	EU956784.1 Zea mays clone 1573856 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983151.1	1e-171	cyclic dof factor 1
TrEMBL	K4AA81	1e-170	K4AA81_SETIT; Uncharacterized protein
STRING	Si035787m	1e-171	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-56	cycling DOF factor 2