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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Zpz_sc04370.1.g00030.1.sm.mkhc |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family |
C3H |
| Protein Properties |
Length: 295aa MW: 30750.9 Da PI: 6.9134 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zpz_sc04370.1.g00030.1.sm.mkhc | genome | ZGD | View Nucleic Acid |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 31.3 | 3.5e-10 | 28 | 54 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C +++rtG C +G+rC+++H++
Zpz_sc04370.1.g00030.1.sm.mkhc 28 PGEADCGYYLRTGGCGFGERCRYNHPR 54
57899********************96 PP
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| 2 | zf-CCCH | 36.3 | 9.4e-12 | 79 | 103 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C ++ +tGtCk+G++Ck++H++
Zpz_sc04370.1.g00030.1.sm.mkhc 79 QPVCEYYVKTGTCKFGSSCKYHHPK 103
789********************96 PP
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| 3 | zf-CCCH | 32 | 2.1e-10 | 177 | 198 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C ++a++G+C+yG Ck+ H+
Zpz_sc04370.1.g00030.1.sm.mkhc 177 PCAYYAQNGYCRYGVACKYDHP 198
8********************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 1.1E-4 | 27 | 54 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.263 | 27 | 55 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.5E-8 | 29 | 54 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.57E-5 | 31 | 55 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 33 | 54 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1E-6 | 76 | 103 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.422 | 76 | 104 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 8.24E-7 | 79 | 105 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.7E-9 | 79 | 103 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 81 | 104 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.0E-5 | 172 | 199 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.375 | 172 | 200 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.6E-8 | 176 | 198 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.7E-5 | 176 | 197 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.16E-6 | 176 | 200 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MWRLGLDGSA GGGEGQEEEA AAWLPERPGE ADCGYYLRTG GCGFGERCRY NHPRDRGGTE 60
FGGGANNGAA SDFPERLGQP VCEYYVKTGT CKFGSSCKYH HPKKDGSLQA VLLNNNGFPI 120
RLASVNPVTS DGAQQTVQAG HYGIGHHGSS TTLDNRTIMN KNMYSQSGQG SLSGAQPCAY 180
YAQNGYCRYG VACKYDHPIG TVGYNSSALP LSEMPMAPYP MGLPVAALAA SSSSPDLRPD 240
YISTKDQSVN HVVSPVAAPE PADAILPKGG FPPDTATRAQ TSASGGGSSS PGGGR
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| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Friedrichs G,Fikri M,Guo Y,Temps F
Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
J Phys Chem A, 2008. 112(25): p. 5636-46
[PMID:18512897] - Ning H,Gong C,Li Z,Li X
Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
J Phys Chem A, 2015. 119(18): p. 4093-107
[PMID:25868004]
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