PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04147.1.g00060.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 161aa    MW: 17650.7 Da    PI: 4.4788
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04147.1.g00060.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB48.22.6e-1535128692
                           NF-YB   6 rflPianvsrimkkvlP.......anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfe 77 
                                     ++lP a v r++k  l        a+  + +da     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f 
  Zpz_sc04147.1.g00060.1.sm.mkhc  35 EELPKAIVRRLVKDKLAhiaggegAEVIVNRDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFS 113
                                     6799999999999988622222112345789************************************************ PP

                           NF-YB  78 dyveplkvylkkyre 92 
                                     ++veplk+ l+  r 
  Zpz_sc04147.1.g00060.1.sm.mkhc 114 EFVEPLKTSLQDKRS 128
                                     *********998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.0E-3131151IPR009072Histone-fold
PfamPF008081.0E-936107IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.51E-2537149IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MADEATNESE PQPQAAGTQD KPAPAAAPMT EAEVEELPKA IVRRLVKDKL AHIAGGEGAE  60
VIVNRDAMAA FAESARIFIH YLSATANDMC KESKRQTINA DDVLKALDEM EFSEFVEPLK  120
TSLQDKRSEA SKKQKEKRRK LNEEALPEKG NDPVDDAENG D
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04147.1.g00060.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605595e-99BT060559.1 Zea mays full-length cDNA clone ZM_BFb0015O22 mRNA, complete cds.
GenBankEU9626975e-99EU962697.1 Zea mays clone 244791 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankEU9640465e-99EU964046.1 Zea mays clone 275447 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankKJ7283015e-99KJ728301.1 Zea mays clone pUT6581 CCAAT-DR1 transcription factor (CADR16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801207.13e-78DNA polymerase epsilon subunit 3
TrEMBLA0A0A9GDS48e-79A0A0A9GDS4_ARUDO; Uncharacterized protein
STRINGPavir.Bb01701.1.p9e-73(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-36nuclear factor Y, subunit B11