PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc04109.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 682aa    MW: 71795.5 Da    PI: 8.7307
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc04109.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001796116323
                                   ETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                   C+ C+k F r  nL+ H r H
  Zpz_sc04109.1.g00050.1.am.mk  96 CEVCNKGFQREQNLQLHRRGH 116
                                   *******************88 PP
2zf-C2H211.50.00096171193123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H + +
  Zpz_sc04109.1.g00050.1.am.mk 171 WKCDKCSKRYAVQSDWKAHSKIC 193
                                   58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.75E-793116No hitNo description
Gene3DG3DSA:3.30.160.601.4E-593116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02594116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9794116IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SMARTSM00355200136166IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.1E-4159192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.75E-7166191No hitNo description
SMARTSM00355140171191IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MASNSSVAFF GIRDGDQQDQ IKPLIPPQQQ LGAALPGVPD ATTAASGHGA PAAAPPPPKK  60
KRTLPGKSLF LFDSDPDAEV IALSPKTLLA TNRFLCEVCN KGFQREQNLQ LHRRGHNLPW  120
KLKQKNPLQA QRRRVYVCPE PTCVHHDPAR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY  180
AVQSDWKAHS KICGTREYRC DCGTLFSRIR VLSGLAATWL WMPCDERGAA PRPPGRGRWR  240
PVGNCSHEPG GRARSTPFMD TDFPYPPWVM VPWERDMGHA CPCPATPAVS LRNLQAYLRD  300
SFITHRAFCD ALAQESARLP PTSLSSLTGH LYGAANAGNM ALSLSQVGSH LNSTFQDGQH  360
HHPPPELLRL GGMAGGSSIA ARLDHLLSPS GASAFRPQQA PPSSAFFLNA AAGQDFGDGA  420
GNGPHSFLQS KPFHGLMQLP DLQGNGAGGP GASGPGLFNI GFFAGNANSS GSSHEHASQG  480
LMSNDQFSGG AGGGGGGGGS EVGIFGGNYV GGGDQVPQAG LFNDQAASML PQMSATALLQ  540
KAAQMGATSS PNGAASMFRG FMGSSSHVRP ATPHMEQSDA NLNDLMNSLA GGGVNAGRMF  600
GGSNGGGGAG MFDPRQLCNM DQEVKFGQGS GDVTRDFLGV GGGSIVHGIS TPRGDHQSSS  660
DMSSLEAEMN KSTSSFNGGR MQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-22167208344Zinc finger protein JACKDAW
5b3h_F6e-22167208344Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1487499SGGAGGGGGGGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc04109.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001338648.11e-171uncharacterized protein LOC542199
RefseqXP_008668634.11e-171uncharacterized protein LOC542199 isoform X1
RefseqXP_008668635.11e-171uncharacterized protein LOC542199 isoform X1
TrEMBLA0A1D6E3190.0A0A1D6E319_MAIZE; Naked endosperm1
STRINGPavir.J10227.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.12e-84indeterminate(ID)-domain 12