![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc03981.1.g00060.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 130aa MW: 13572.9 Da PI: 4.4937 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 37 | 8.7e-12 | 95 | 130 | 1 | 36 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevsk 36 rW+++e+laLi++r+em+ ++r++ lk+plWe+v++ Zpz_sc03981.1.g00060.1.sm.mk 95 RWPREETLALIRIRSEMDAAFRNAPLKAPLWEDVAR 130 8*********************************95 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 130 aa Download sequence Send to blast |
MLHHHGGARF PYAAPGTTDA VQFSFPPPPT DPESFTTIPQ PPAPAETSVF AELPFAGSGS 60 GVVAASNLHE DDDTPADFGV SGTGASGASG SGSTRWPREE TLALIRIRSE MDAAFRNAPL 120 KAPLWEDVAR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc03981.1.g00060.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT054872 | 3e-38 | BT054872.1 Zea mays full-length cDNA clone ZM_BFc0165O02 mRNA, complete cds. | |||
GenBank | BT067767 | 3e-38 | BT067767.1 Zea mays full-length cDNA clone ZM_BFc0150E20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953287.1 | 2e-25 | trihelix transcription factor GTL1 isoform X1 | ||||
Refseq | XP_012699251.1 | 2e-25 | trihelix transcription factor GTL1 isoform X1 | ||||
TrEMBL | A0A0A9DG78 | 1e-30 | A0A0A9DG78_ARUDO; Uncharacterized protein | ||||
STRING | Si016578m | 9e-25 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15223 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G33240.1 | 4e-14 | GT-2-like 1 |