PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03981.1.g00010.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 229aa    MW: 25719.5 Da    PI: 4.9501
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03981.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-184497456
                                    -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox  4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                    +++ft+eq++ Le+ F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Zpz_sc03981.1.g00010.1.sm.mkhc 44 KRRFTEEQVRSLETTFHArRAKLEPKEKAELARELGLQPRQVAIWFQNKRARWR 97
                                    458**************8899********************************9 PP
2HD-ZIP_I/II121.73.6e-3942135193
                     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeene 78 
                                     e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+ L+++ydal+++ e
  Zpz_sc03981.1.g00010.1.sm.mkhc  42 ERKRRFTEEQVRSLETTFHARRaKLEPKEKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYADLRARYDALRDRVE 120
                                     69*****************9999******************************************************** PP

                     HD-ZIP_I/II  79 rLekeveeLreelke 93 
                                     +L +e+++L+++l++
  Zpz_sc03981.1.g00010.1.sm.mkhc 121 ALAQEKAALAAQLDD 135
                                     **********99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.59E-1734101IPR009057Homeodomain-like
PROSITE profilePS5007117.2483899IPR001356Homeobox domain
SMARTSM003892.5E-1741103IPR001356Homeobox domain
CDDcd000865.51E-1643100No hitNo description
PfamPF000466.5E-164497IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-1944105IPR009057Homeodomain-like
PRINTSPR000315.3E-77079IPR000047Helix-turn-helix motif
PROSITE patternPS0002707497IPR017970Homeobox, conserved site
PRINTSPR000315.3E-77995IPR000047Helix-turn-helix motif
PfamPF021831.2E-1199138IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MERDCQFLAP PHQYEDQLLH QLMMVGEQDP AGAAGVRAGG GERKRRFTEE QVRSLETTFH  60
ARRAKLEPKE KAELARELGL QPRQVAIWFQ NKRARWRSKQ LEHDYADLRA RYDALRDRVE  120
ALAQEKAALA AQLDDLKLKG RLNERRDQSC SCDVDNGGTT FEVDDKRKNN SNSVSSPDDG  180
AVAPAGATSE DSTAGGYYDD VAYAGLSDPF CNPPELWDAW PLLEWNAVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03981.1.g00010.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636854e-95AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence.
GenBankAK2876044e-95AK287604.1 Oryza sativa Japonica Group cDNA, clone: J065054D22, full insert sequence.
GenBankEU8475154e-95EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151825.15e-93homeobox-leucine zipper protein ATHB-6
SwissprotA2X7U13e-73HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A1D6HER16e-92A0A1D6HER1_MAIZE; Homeobox-leucine zipper protein ATHB-6
STRINGGRMZM2G117164_P011e-92(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-21homeobox 7