PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03837.1.g00020.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 443aa    MW: 49178.9 Da    PI: 7.781
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03837.1.g00020.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-1456100147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     r +WT++E++l+++  k++G   W++I +++g  +t+ q++s+ qk+
  Zpz_sc03837.1.g00020.1.sm.mkhc  56 REKWTEDEHKLFLESLKLHGRA-WRRIQEHIG-SKTAVQIRSHAQKF 100
                                     789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.47E-1450105IPR009057Homeodomain-like
PROSITE profilePS5129418.27251105IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-853103IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-1454103IPR006447Myb domain, plants
SMARTSM007175.5E-1255103IPR001005SANT/Myb domain
PfamPF002493.3E-125699IPR001005SANT/Myb domain
CDDcd001672.77E-958101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MARFQEFEVR NDQIAAGGDV GHEDHLKNPL NSGVVDLPDE ERVPKARKPY TISKQREKWT  60
EDEHKLFLES LKLHGRAWRR IQEHIGSKTA VQIRSHAQKF FSKVTRESTA DGNGVVAAPR  120
IRIPPPRPKR KPTHPYPRKL GNSPGKGAPY RKLLDKPQLQ VVPSSYEQEN DSPKSVLTRA  180
QVVRSPASSV GAEDRCSAQR IAAVEVATQL PPYKVYNGDS VSKHSNCGIP ESPVLRLFGK  240
RVVVNGLHQQ PNLDPGNQQN VADMELDASA ETSTTGTEKL SSCGAAEANT LSPYPTDKHQ  300
FMYYLPQGKV LFVPSDCQFF SYNNGSMDCT VSNPQAKQQQ NQPSQAADCR FRSGEGSCTE  360
SITTSSSVPE TPTQNSESVD SVQVLAYNEE DEVIPVPGSR KYVNPNPDSL RGFVPYKYNA  420
EREMVQSQTD EVQADREMTR LCL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03837.1.g00020.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824173.11e-172uncharacterized protein LOC112899782
TrEMBLA0A2S3I9P71e-170A0A2S3I9P7_9POAL; Uncharacterized protein
STRINGSi010077m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.15e-33MYB_related family protein