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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc03720.1.g00020.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 159aa MW: 18539.1 Da PI: 10.072 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.6 | 5.2e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie++ nrqvtfskRr+g++KKA+EL +LCda++ +i+f tg+ly++ss Zpz_sc03720.1.g00020.1.sm.mkhc 9 KRIESEANRQVTFSKRRAGVFKKAKELATLCDAQIGLIVFTDTGQLYDFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 15 | 9.9e-07 | 84 | 115 | 67 | 98 |
K-box 67 skKnellleqieelqkkekelqeenkaLrkkl 98 + K++ ll+qie+ kk +++en++L++k+ Zpz_sc03720.1.g00020.1.sm.mkhc 84 DAKEQTLLDQIEQFNKKASIMNNENEELKRKI 115 579***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.5E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.861 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.28E-37 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-29 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.3E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MGRGKTVLKR IESEANRQVT FSKRRAGVFK KAKELATLCD AQIGLIVFTD TGQLYDFSSS 60 SMKSIIERYH HVKEGQQNVT SSTDAKEQTL LDQIEQFNKK ASIMNNENEE LKRKISIVRQ 120 ENNKLKEIYT NLTGKKWSQK MDQHWTFVCI DYYKSYKQT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-20 | 1 | 100 | 1 | 91 | MEF2C |
5f28_B | 8e-20 | 1 | 100 | 1 | 91 | MEF2C |
5f28_C | 8e-20 | 1 | 100 | 1 | 91 | MEF2C |
5f28_D | 8e-20 | 1 | 100 | 1 | 91 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc03720.1.g00020.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006656060.1 | 1e-38 | PREDICTED: MADS-box transcription factor 23-like | ||||
Swissprot | Q6EP49 | 2e-37 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A0E0LBE3 | 6e-40 | A0A0E0LBE3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G13170.1 | 1e-40 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP35660 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.2 | 9e-36 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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