PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03640.1.g00040.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 414aa    MW: 45821.6 Da    PI: 5.9749
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03640.1.g00040.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.71.1e-06154177123
                                   EEETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                   y+C+ Cg+ F+++ +L+rH r  H
  Zpz_sc03640.1.g00040.1.sm.mk 154 YSCTVCGRKFPTRPDLTRHFRQiH 177
                                   99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.09E-5152180No hitNo description
Gene3DG3DSA:3.30.160.602.2E-5153181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.568154182IPR007087Zinc finger, C2H2
SMARTSM003553.3E-5154177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280156177IPR007087Zinc finger, C2H2
CDDcd061675.37E-11182304No hitNo description
Gene3DG3DSA:3.40.50.10101.4E-5201293IPR029060PIN domain-like
PfamPF019361.2E-4228294IPR021139NYN domain, limkain-b1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MPLAPSFLHL PPTPAPLYPL PINRTQHLSL RAAPLPRRAA VAAAAAAEAD NPSVAPASAD  60
VEMVRGRDGV WTARSPTVVV LWDLDNKPPR GPPFPAASSL ITAASLLGRV VSVSAFANRH  120
AFTHLPAWVS AERRDRRALD RAERAGVVAP PVPYSCTVCG RKFPTRPDLT RHFRQIHERE  180
RNKKLNRMRS LKGKKRQKFR ERYISGNTKY NDAVRELLTP KVGYGLASEL RRAGVDVRTV  240
PDKPQAADQA LKRQVKHSVA CGVDWLVLVS DDSDFTDTVR KARDADLRTV VVGDGCRALG  300
NVADIWLPWD RVETGNVDEE MLRFGTRPDF EVEEEYQQDG QFVVEWDTSD LDGLVDDIIG  360
TRTSLLGAAT MSAFADSDIT DGIFEVGLNG DSMFWSSDDE EEDDYLGKSQ LEEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03640.1.g00040.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810356.10.0uncharacterized protein LOC112888367
TrEMBLA0A1E5VTE60.0A0A1E5VTE6_9POAL; Uncharacterized protein
STRINGGRMZM2G086277_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-104C2H2-like zinc finger protein