PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03540.1.g00020.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 330aa    MW: 37139.4 Da    PI: 6.1215
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03540.1.g00020.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.45.7e-5351361129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 
                                   +ppGfrFhPtdeelv +yL+kkv++++++l +vi++vd+y++ePw+L+   k+   e+++wyfF  +d+ky+tg+r+nrat
  Zpz_sc03540.1.g00020.1.sm.mk   5 VPPGFRFHPTDEELVGYYLRKKVASQRIDL-DVIRDVDLYRIEPWHLQDhcKIGYeEQSDWYFFNYKDRKYPTGTRTNRAT 84 
                                   69****************************.9***************942443332556********************** PP

                           NAM  79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                    +g+Wkatg+dk+v +k ++ l+g++ktLvfy+grap+g+ktdW+mheyrle
  Zpz_sc03540.1.g00020.1.sm.mk  85 LTGFWKATGRDKAVRDKhGRGLIGMRKTLVFYTGRAPNGRKTDWIMHEYRLE 136
                                   ****************966678****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-573153IPR003441NAC domain
PROSITE profilePS5100558.3785153IPR003441NAC domain
PfamPF023655.8E-286135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MESCVPPGFR FHPTDEELVG YYLRKKVASQ RIDLDVIRDV DLYRIEPWHL QDHCKIGYEE  60
QSDWYFFNYK DRKYPTGTRT NRATLTGFWK ATGRDKAVRD KHGRGLIGMR KTLVFYTGRA  120
PNGRKTDWIM HEYRLETDEN AEEGWVVCRA FKKRAVHPQR GLGGDMGYSF HDPRTTGTAA  180
RFKQEPPQLD AGAAAALLQY STCLSELPQL ESPPPPNQDS HRGTADGERD YDLDPNKQDA  240
AVSTDWRALD RFVASQLSSD GERLSRGLPQ ELGKPVGELA GVDNGDESDI VALLLLDGVP  300
EEDAGLLDSV ASTSACLRKN EARCGTRYPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-46215412169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03540.1.g00020.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750860.0KT075086.1 Panicum virgatum secondary wall NAC master switch (SWN4B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661306.11e-162NAC domain-containing protein 105
RefseqXP_022678690.11e-162NAC domain-containing protein 105
RefseqXP_022678691.11e-162NAC domain-containing protein 105
SwissprotQ9SL415e-98NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A2S3IP751e-150A0A2S3IP75_9POAL; Uncharacterized protein
STRINGPavir.Ia02924.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36253768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.12e-95vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]