PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc03473.1.g00040.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 216aa MW: 24325.8 Da PI: 9.996 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.7 | 5.4e-28 | 84 | 134 | 2 | 52 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 pr+rWt eLH++F++a+e LGG++kAtPk il++m+ kgLt++hvkSHLQk Zpz_sc03473.1.g00040.1.am.mk 84 PRMRWTAELHRSFLQAIECLGGQDKATPKLILRFMGAKGLTISHVKSHLQK 134 9*************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-26 | 80 | 134 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.075 | 80 | 140 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-15 | 81 | 136 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-22 | 84 | 134 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-7 | 85 | 134 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MRWLESLDQC IPFVPFHLFT SHASQYAKSC QEEEAGENRK ASVWFFPLAP AAFSAPGCLR 60 VQASEMGSGG RNGAVRRYNR SKEPRMRWTA ELHRSFLQAI ECLGGQDKAT PKLILRFMGA 120 KGLTISHVKS HLQKREVWTV WRRKRAEMGT EASYKGMQGS QGISEMRTAA NQYYCMHDYM 180 QAMAMEGRIK QEGLRWQRDA AAAAAADVVS SLQTVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-16 | 85 | 134 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-16 | 85 | 134 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-16 | 85 | 134 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-16 | 85 | 134 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-16 | 85 | 134 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-16 | 85 | 134 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-16 | 85 | 134 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-16 | 85 | 134 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-16 | 85 | 134 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-16 | 85 | 134 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-16 | 85 | 134 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-16 | 85 | 134 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc03473.1.g00040.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 2e-50 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652650.1 | 9e-55 | PREDICTED: uncharacterized protein LOC102700890 | ||||
TrEMBL | J3M0G9 | 2e-53 | J3M0G9_ORYBR; Uncharacterized protein | ||||
STRING | Pavir.Gb01051.1.p | 2e-55 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2966 | 35 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 7e-26 | G2-like family protein |