PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc03262.1.g00070.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 155aa MW: 15925.8 Da PI: 9.9702 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 54.3 | 2.9e-17 | 11 | 41 | 26 | 56 |
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRla 56 +AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Zpz_sc03262.1.g00070.1.sm.mk 11 VATPKQIRELMKVEGLTNDEVKSHLQKYRLH 41 7****************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01557 | 3.1E-14 | 10 | 41 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 3.17E-7 | 11 | 44 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.6E-15 | 11 | 44 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 155 aa Download sequence Send to blast |
MISCDATVRA VATPKQIREL MKVEGLTNDE VKSHLQKYRL HTRRPNSTVP TSSTSAATPA 60 PQVFVVGGIW VPPPEYAVAA AAAHPPVQQP TADASGGAST VYAPVATLPS GAQTQSRELG 120 AVKKQPNRFS DGRSAGDASS ASPAVSSSSS QTTSA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc03262.1.g00070.1.sm.mk |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954868.3 | 4e-38 | transcription factor NIGT1 | ||||
Swissprot | Q6Z869 | 7e-31 | NIGT1_ORYSJ; Transcription factor NIGT1 | ||||
TrEMBL | A0A1E5UQ02 | 4e-44 | A0A1E5UQ02_9POAL; Myb family transcription factor EFM | ||||
STRING | Si019945m | 8e-39 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6470 | 37 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68670.1 | 4e-21 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|