PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03262.1.g00060.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 273aa    MW: 29986.5 Da    PI: 6.1116
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03262.1.g00060.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like29.71.4e-09237261226
                       G2-like   2 prlrWtpeLHerFveaveqLGGsek 26 
                                    r++W+peLH+ F++a++qLGG++ 
  Zpz_sc03262.1.g00060.1.sm.mk 237 LRRCWSPELHRLFLQALQQLGGAHG 261
                                   69********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-6234260IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGMDPPPPQP PSLHVAGAGD RRRCREYLLA LEEERRKIQV FQRELPLCLD LVTQTIERIK  60
LEMDGVGSEE TVSDRGPVLE EFMPLKPSLS LSSSEEHDSA RDASVGGGNK AEAADKPCPL  120
PETKKATPDW LQSVQLWSQE PQHQRTTCSS HKELPCKPVA LNARKAGGAF QPFEKEKRVE  180
MPASSTTAAT SSTVAGDSGD KADASMDTEK HSSDDKETTN KDATGKDKEG QSPSRKLRRC  240
WSPELHRLFL QALQQLGGAH GWYPSHPAPD RAD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03262.1.g00060.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954868.31e-100transcription factor NIGT1
SwissprotQ6Z8694e-84NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLA0A0A9G3F31e-106A0A0A9G3F3_ARUDO; Uncharacterized protein
STRINGSi019945m1e-102(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-26G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]