PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03143.1.g00070.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 301aa    MW: 32868 Da    PI: 8.7733
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03143.1.g00070.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.21.8e-30136192158
                       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                     d+p+YVNaKQy++Il+RR +R+k+e+e++l  k rkpylheSRh hAlrR+RgsgGrF
  Zpz_sc03143.1.g00070.1.sm.mkhc 136 DAPIYVNAKQYEAILRRRRAREKAEKENRL-VKVRKPYLHESRHLHALRRARGSGGRF 192
                                     68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-33134195IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.808135195IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-22138160IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.5E-27138192IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-22169192IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MMGFRQFATA ASSNGAPLPW WTGAAPHQMM YGETWGQGKP PAVSPEDPCR ESRFQVVPGS  60
QALLEPLAPP SPKAVQEREF PDVMRFSIAQ GKGDKGFDHS ATVALQSPYA LYSGHFELGL  120
GHSMPGGRIP LNMPSDAPIY VNAKQYEAIL RRRRAREKAE KENRLVKVRK PYLHESRHLH  180
ALRRARGSGG RFLNTKKDAN GKDAGAGGKT TVSNPLMLQA ASPSSEIQQS ELGNPSSVST  240
LSGSEVSSMY DHEDVDHYHN FDQLRTPFFT QLPILMDGEH GAGNPFKLAA ASENCCDLLK  300
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A6e-17136194261HAPB protein
4g92_A6e-17136194261HAPB protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03143.1.g00070.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963196.11e-126nuclear transcription factor Y subunit A-10
RefseqXP_022680516.11e-126nuclear transcription factor Y subunit A-10
TrEMBLA0A0A9K8J01e-153A0A0A9K8J0_ARUDO; Uncharacterized protein
STRINGPavir.J24924.1.p1e-127(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.13e-23nuclear factor Y, subunit A6