PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03130.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 522aa    MW: 56337.5 Da    PI: 10.6735
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03130.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-31456514259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                    D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Zpz_sc03130.1.g00050.1.am.mk 456 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 514
                                   69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.7E-14411453IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-33443514IPR003657WRKY domain
PROSITE profilePS5081129.987450516IPR003657WRKY domain
SuperFamilySSF1182901.26E-26453514IPR003657WRKY domain
SMARTSM007742.5E-38455515IPR003657WRKY domain
PfamPF031061.3E-26457513IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MRKTRTAAII SGPHPWLPPH RSLHSASESA WTAAAAAAAS ACFFFACPPG REKRLSPPPL  60
WSRLSSPVRR EREEGEAWLG RCEVRLVHLL LFFLLVARCQ DHACYTSVLV FRGLEQRLIV  120
VIIGSGKAPS MEGMEEANRA AVQSCHRVLA LLSEPQGQLD LNKDLAAATG EAVSKFGSLT  180
SKLANGNGRQ GHARVRKVKK PLAIIDGNLF LESPAVAAAD AAAAAKTPKP SPITGLQLFP  240
RYQQQGEGSS SKEPVRIPAQ FPKRLLLENP AVDLEGPSLA PPLRLVHPVS VAPPAGTPHS  300
ALPAAHLQFI QQHQSYQRYQ FMQQMRIQGE MMRRSSLGDQ GQGGSGSAAA GKGVNLKFDG  360
SNCTASSSRS FLSSLSMEGS LASLEASRAS RSFQLVNGSQ TASTPELGGQ RRRCTGKADG  420
SGRGATRCHC AKKRKLRIRR SIKVPAISNK VADIPADEFS WRKYGQKPIK GSPHPRGYYK  480
CSSVRGCPAR KHVERCVDDP SMLIVTYEGD HNHNRALAQP AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-204535141272WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc03130.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632919.10.0protein WRKY1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A0E0D6P50.0A0A0E0D6P5_9ORYZ; Uncharacterized protein
STRINGOMERI03G30220.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.17e-59WRKY DNA-binding protein 74