PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02945.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 628aa    MW: 68095.5 Da    PI: 9.485
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02945.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.7e-06220239120
                                   EEETTTTEEESSHHHHHHHH CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                   ++C+ C+k+F+r  n++ H+
  Zpz_sc02945.1.g00010.1.am.mk 220 FVCHVCNKTFNRYNNMQMHM 239
                                   89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-5216243No hitNo description
Gene3DG3DSA:3.30.160.607.3E-5220239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.305220247IPR007087Zinc finger, C2H2
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
SuperFamilySSF576679.44E-5288324No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MGLRTCAMES DAAVGSRFFQ WLKPRCSSSS SSRPSSYSSS SGASMASASV TRHRDVAVRG  60
EEGGGGGGGG QEVSSVTCLP LLSRLEGEKR PEDHEAPHPL REEIVGVAAT GGTWQSGVDL  120
NIGLPVGDED AAMDEKDDAE EHHEEENEEE EMEEWKQHMH AGCKAEVELE RGDAVAASVE  180
GSSKIVVGEF GTVGAESGVA TGCRYWIPTP AQILLGPVQF VCHVCNKTFN RYNNMQMHMW  240
GHGREYRKGP DSLKGSQTLA MLKLPCYCCA AGCKNNIAHP RARPLKDFRT LQTHYKRKHG  300
SKPFRCRRCA KPFAVKGDWR THEKNCGKRW FCACGSDFKH KRSLNDHVRS FGADHRPVDE  360
PPAAAARERT IRFHRPVAAL DLVASVAHAQ GASPQKMSTF FARATCARTA TVFTSSTRAS  420
FETGPWRLRT EPGVIRKYHG GVINHPASSS SDRSNGFVSD AARRRPAAAL PAVKECQKGG  480
PKVTGRGDAY PAWQCRRPRV YLTCTCGGIR SCAAARRARR ATNEPTTKGC RLGATGHFPL  540
GRAPAKERRT NHGCRSHDDD EASGTHKRTA AAPGPCVMHP SLGLLPRSGR KQHSSGQKKL  600
GGPMHGRSIA SVDGDRSREH SSVAATAY
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02945.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0643340.0AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458800.11e-153protein TRANSPARENT TESTA 1
TrEMBLA0A3L6RIY51e-156A0A3L6RIY5_PANMI; Uncharacterized protein
STRINGPavir.Ea03764.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.13e-90WIP domain protein 5